LOC111194505


Basic Information

Item Value
gene id LOC111194505
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7253026 ~ 7254591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203177
acacAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAGTCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattttaaaaaatcaatattttcaatCTCTAGTTTAGAGAGTTCTctagtagagctgggcgattaatcgattttatcgataaATTCGAATTTATAGTTAAGgacaatgtgtttttatgaaaatcgattttctctgagttttcttTTTCACCACAGACGCTCCTCTGTGGGCACAGAGTGAGCTTAGCTAGCTCCCTCCATACCTCCCTCCCTCCAGCGCGCGCACCCCCcgcccctccctccctccctccctccctccc
>XR_002651108.1
cacAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAGTCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203177 True 706 lncRNA 0.48 3 7253026 7254591
XR_002651108.1 False 449 lncRNA 0.50 3 7253027 7254335

Neighbor

gene id symbol gene type direction distance location
LOC111194504 NA coding upstream 306058 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 311829 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 314043 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 347385 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 514992 6737961 ~ 6738034 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 262413 7517004 ~ 7540136 (+)
srprb srprb coding downstream 351898 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 366006 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 567390 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 736903 7991494 ~ 8017086 (+)
G149960 NA non-coding upstream 359375 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 425254 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 445984 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 489920 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 508001 6741526 ~ 6745025 (+)
G150002 NA non-coding downstream 18614 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 119422 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 393032 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 399837 7654428 ~ 7659678 (+)
G150069 NA non-coding downstream 425077 7679668 ~ 7740088 (+)
LOC111194506 NA other upstream 1660 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 305090 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 666657 6583046 ~ 6586369 (+)
G149754 NA other upstream 1525606 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1994165 5227918 ~ 5258861 (+)
G150099 NA other downstream 515093 7769684 ~ 7805254 (+)
G150131 NA other downstream 620049 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1394239 8648830 ~ 8656708 (+)
G150579 NA other downstream 2301068 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2596627 9851218 ~ 9852854 (+)

Expression


Co-expression Network