G150065 (LOC108424050)


Basic Information

Item Value
gene id G150065
gene name LOC108424050
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7654428 ~ 7659678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203259
ttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctgtaaatgacaatatttttatctggaatttgtgagaaatgttttagaaactgaagtgtctcttaattttttttcccagagttgtattttgtatatagtACAGTTATTTTGCAAGTagaaaaagtgcagaaaaaaaacaatacaaacatcTTTTACCTCAAATAAAACCTACTCTTCTTTCTTGGCATTGAGCATTTATGGGGTTCCTCAAGGCTCAGTtgtgggccctattttatttaAGGGTATTTGTAACAGTTGCTTATAGCCGTCTTTTTATActccttacaaaaaaaaacagtacacgAGTTTTGCTGAAATGCAACGTCTCTTCACAAGCTTCTGAGCATCTCCAGGCTTTAGTTGTTTACAGCAAAAACAACATGTAAAATCAACAGTTCTCACTCTCCTCGGAAAGTATATTCTCAAAGATCAGGCGAGGTTCTGCATAATCCACTCAACTCCTTCTCTTGTATTTGAATCAGCATATTAAAGGTTCCTAGGAAGCACAGTCTCAGAGCGGAAGAACCGGACTGATTGGTCCACTGCAGCTCCTCTGTGTATGCTAAGTGATGCTAATGGCTGGTGAGCTCAATAGATTTGTTAAAATGGGGCGTTTGGGATATCTCGGGCTTGGTGGaagtctctgtgtgtgagttcAGGCCTCCATTAGCCAAGGGCTTGCGGGTGAGGGTGGCAGTGAGCTTCCTGCGGAAGACCCGGCACAGGAAGACGTAGATGAGAGGGTCCAGGCAAGTGTTGGTGGCAGACAGCCAGAGTGTGATCTCCTTGGCAAAGTAGAGCTGGTTCTGAGCCCAGCAGTGGGCGGACGTGCCTCGCGTCTGAGTGAGGGTGTAGGGCACTCTGGCCAAGTGGAACGGAGCAAAG

Function

NR:

description
PREDICTED: P2Y purinoceptor 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203259 True 960 lncRNA 0.43 2 7654428 7659678

Neighbor

gene id symbol gene type direction distance location
neu4 neu4 coding upstream 26888 7620597 ~ 7627540 (+)
srprb srprb coding upstream 42817 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 114292 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 707460 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 713231 6939059 ~ 6941197 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 162303 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 331816 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 516431 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 638566 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 669620 8329298 ~ 8357694 (+)
G150060 NA non-coding upstream 6542 7647623 ~ 7647886 (+)
G150015 cux1 non-coding upstream 270450 7374013 ~ 7383978 (+)
G150002 NA non-coding upstream 370092 7273205 ~ 7284336 (+)
LOC111194505 NA non-coding upstream 399837 7253026 ~ 7254591 (+)
G149960 NA non-coding upstream 760777 6893316 ~ 6893651 (+)
G150069 NA non-coding downstream 19990 7679668 ~ 7740088 (+)
G150104 NA non-coding downstream 147188 7806866 ~ 7807171 (+)
LOC111194509 NA non-coding downstream 206432 7866110 ~ 7873133 (+)
G150132 NA non-coding downstream 216517 7876195 ~ 7877950 (+)
G150203 NA non-coding downstream 309099 7968777 ~ 7969064 (+)
LOC111194506 NA other upstream 403062 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 706492 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1068059 6583046 ~ 6586369 (+)
G149754 NA other upstream 1927008 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 2395567 5227918 ~ 5258861 (+)
G150099 NA other downstream 110006 7769684 ~ 7805254 (+)
G150131 NA other downstream 214962 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 989152 8648830 ~ 8656708 (+)
G150579 NA other downstream 1895981 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2191540 9851218 ~ 9852854 (+)

Expression


Co-expression Network