G150245


Basic Information

Item Value
gene id G150245
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8188267 ~ 8190741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203469
AAGCAAATACAATTCACCAATACATTATTTGTAATGCGGAAATATGGGAAATTCTACACCTTCACAAAAGTATAAATAAGCATTTGTCTGCAATATAGATATATTCTGCGAGTAGCAGGAAGTAGTGTTGTACATAAGGAGtgcaataaataaagtaaaacataaaaatgtaacaacatatacagtataaggcCACAAAAGTACATcctaaaaccaaataaaacaaaaacataaaatcaaccATCTGTACTTTTTCAAGTTCAATCATTTTGCAGTTCATTTCAtttaacacagtgttttacCGTTAGCGAAAAGCTCAggttccaaaaaaaaagcaaaaacaatcaCATAAATGCATTGTATTTGGGAATGCGTACAAATATTAACTTGGGTATTGTTCAATTATTCTCCAAACTTCAACTCTTAACACTACTCTGAGAGATTACAGTAGAAGCACTGGGATTTTTAAAGGAAATCATTTTTATCCAAGAAAGCAACCTGAATATGCTACAAATCAGATCATGCTAACTTACCACAGAAGCCTTCATTTACCATCATTCATTtacaaatcatacatttacactaAAAAGCACAGTTATTGGTTTATTAGGATATGAtgcaccaatcagccataatatTAACACCATATTCTTGTTTCTATAtagaagcactttgtagttctataattaaagactgtagttctgtatctgctTCCCTTTCAAGCTGTTCTTTTATGGTCAGGACCACCCatgatagaccaccacagagcagctattattctttgggtggtgggtcactGATTCTCAGCTCTGAAGTGACTgtactgacatggtggtggtgtatgaggtgttagtagtgtgtgttgtgttgatacagtgagtggatcaggtacagcagtgctgctggagtttttaaacactgttctaTGGCTGTACGATATATGGTTTAAGCATTGTGATCGagacgtgtgatgtcacttaaaaAGGCAATTAAACTaaacacatcatgttgcaatgttttgattcttgacataAGAAGTACAGTAGAcacacagcactgtctctgtgtctgtgtgagggacaggctgctgctgcctgagaagcgcgaggttggcttgtaaacgcacgtgtcaaaagctgtgcacctcagtccagcacagttttgcagcgatgatatttccagttacagctgaattcacacttttaataagaataaataaatctctattaaccttttaaagagtgCTTGGCGCTAaatcagctcttgattggtctggACGCGAGACAGCGCCTggttgggggcggggctggtgacatcatgggccctgcattgtttaatatcgcaatataaaTCGCAGAGCATTTCAATGTAAAATTTTGATGGCACTAGTGGATGCCACTCAAAGGACTATTCCCAGTTCAGCAGTGACATTAAGACATTGAatctaaggtgtttaaaaactccagcagcactgctgtgtctcatCCACTCAtaaaaccagcacaacacacactattaaCACCCAGCGCATAATCtagtgcagtcactgcagtgctgagaatcaaTGACCCACCATCCAAACTATAGCGTTTCTTcagtggtcctgtggggtcccgAACACTGAATAACTAAAGGGTGAAAAGAAGTTAACAGAgaaagcagagaaacagataaaggACTACAAATGGCtgatctgtatatatatatgttactgcatattaacagtCTCCCTGCACACTGTAGCACACTTACTTTAATTCCTTGCATTATAAGTCCTAATAAAGTCCTTCACTTCGGAGTCGGGTCCACCTGAGCTGGGAAAACACAAACATGCGAGTGCATGGGCTccctatacatttttatatcataaagatttatttattttgctctaaataataataacatgcaTTTATGTTGCGCTGTAACTTCTTCATATGTACAGCTTTGGATTAGgcagtgattaaaaaaagaaaatgctgcATGCAAATAAGCTGCTATTGCGTTCgttaaaacaaaaagttatttaatataAGAGGTTACTGAGGTTTAAAAATGAGCATTTGGGTTTAGCATCGGGGTTGGGAGCACTATGGTTACCGGTATTTGGTATCTAACAGACAAACCCGTGAGGATGTAATCAATGGCTGTGACTGAAATGGATCCTTTTTTTCAGGAGTTTATGATATGGGCAAAAACTTAAGATTTGTAATCACAATGTTGGAAGTAGTAATTTGCTGTGTGAATTCACTGTggatctctcactctctctgctttactctgcctcgctctacatCCAGCCTCAGTATGTCACACAATCCCATTTTGCAGCATCAacagctccctctgttgctcgTCAAGGGTAATGCAGTTTGAGCTTGATGTTATTCACAATGTTATCACAGCTTGTTaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203469 True 2412 lncRNA 0.38 2 8188267 8190741

Neighbor

gene id symbol gene type direction distance location
LOC103039989 LOC108427187,LOC108429492 coding upstream 8648 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 171181 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 350842 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 560727 7620597 ~ 7627540 (+)
srprb srprb coding upstream 576656 7606489 ~ 7611611 (+)
LOC111194453 NA coding downstream 107503 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 138557 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 178628 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 195561 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 292805 8483546 ~ 8493022 (+)
G150239 NA non-coding upstream 32422 8155636 ~ 8155845 (+)
G150235 NA non-coding upstream 59507 8128466 ~ 8128760 (+)
G150196 NA non-coding upstream 206867 7981094 ~ 7981400 (+)
G150203 NA non-coding upstream 219203 7968777 ~ 7969064 (+)
G150132 NA non-coding upstream 310317 7876195 ~ 7877950 (+)
G150254 NA non-coding downstream 16727 8207468 ~ 8261000 (+)
G150248 NA non-coding downstream 67171 8257912 ~ 8309434 (+)
LOC111194510 NA non-coding downstream 80572 8271313 ~ 8275506 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding downstream 85564 8276305 ~ 8279882 (+)
G150269 cplx4c,LOC108427184 non-coding downstream 122286 8313027 ~ 8324648 (+)
G150131 NA other upstream 308966 7874640 ~ 7879301 (+)
G150099 NA other upstream 383013 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 936901 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1240331 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1601898 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 458089 8648830 ~ 8656708 (+)
G150579 NA other downstream 1364918 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1660477 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1951383 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 2000779 10191520 ~ 10279830 (+)

Expression


Co-expression Network