G150254


Basic Information

Item Value
gene id G150254
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8207468 ~ 8261000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203484
ctgtcactgaggacccacattcctgcacattttattgtttttgtaacacattacttgctccaggaccagtgtatattatggagggttttttttcaatacgattcataagccagaagcagaaatatttataattcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaatcgattcccacccctaCAAAAAAGGGC

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203484 True 242 lncRNA 0.38 2 8207468 8261000

Neighbor

gene id symbol gene type direction distance location
LOC103039989 LOC108427187,LOC108429492 coding upstream 27849 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 190382 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 370043 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 579928 7620597 ~ 7627540 (+)
srprb srprb coding upstream 595857 7606489 ~ 7611611 (+)
LOC111194453 NA coding downstream 37244 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 68298 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 108369 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 125302 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 222546 8483546 ~ 8493022 (+)
G150245 NA non-coding upstream 16727 8188267 ~ 8190741 (+)
G150239 NA non-coding upstream 51623 8155636 ~ 8155845 (+)
G150235 NA non-coding upstream 78708 8128466 ~ 8128760 (+)
G150196 NA non-coding upstream 226068 7981094 ~ 7981400 (+)
G150203 NA non-coding upstream 238404 7968777 ~ 7969064 (+)
LOC111194510 NA non-coding downstream 10313 8271313 ~ 8275506 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding downstream 15305 8276305 ~ 8279882 (+)
G150269 cplx4c,LOC108427184 non-coding downstream 52027 8313027 ~ 8324648 (+)
G150297 NA non-coding downstream 175595 8436595 ~ 8437402 (+)
G150292 NA non-coding downstream 321444 8582444 ~ 8585056 (+)
G150131 NA other upstream 328167 7874640 ~ 7879301 (+)
G150099 NA other upstream 402214 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 956102 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1259532 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1621099 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 387830 8648830 ~ 8656708 (+)
G150579 NA other downstream 1294659 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1590218 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1881124 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1930520 10191520 ~ 10279830 (+)

Expression


Co-expression Network