CI01000012_05923216_05928055 (SRD5A2B)


Basic Information

Item Value
gene id CI01000012_05923216_05928055
gene name SRD5A2B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5922385 ~ 5929186 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05923216_05928055.mRNA
AGATAAAAGACGCTGAAGTTTGGGGTTCTTTAGATCACTATCATGGTGAACAAAAAGGCTGTTAAGTACACATAAAATGTAAATTTTTGGATGCTATTATTTCAATATTTATAATATTAAATAATATAATGTAAATATTTAAATGTGAAGTTCCTTCAAAAGATGCCAAGAGGTTCTACAAATGGTTTAGCCAGTGTTGTGGAAATGTAAGGAAACCTAAATGGTGCCTCAAGCATATTTTCATTTTTACAGTCTGAGAGGAGATTTCCTATTGAAAAGTATTAATATGTACACCAAAACAAACACAAAAGGAAAATAAATGCCCATTTTCCTCATTGAAATATGATGATACTAGCTCTTTCACCTAGTTTCTCATGCTTTTATTTGTGTAATCAGGTTGATGAAAGAATAATTGCTCTGTAAAATGACTGAAAATCGAATTTCTTTGTTCATCTTTCTGAACACAAAATATACAGGATTAACAACAACATGGTCTTCTTACTGATTCTTACTGAAAACAATATCCCAGCCTCACCGACATGCCTGTGTTTTGATACCATTCTATCATATGAAAACTGATGCTCCCCACCAGTACATTAGTGGAAATATCTCTCGCAATATGTCAAAAGGGAAATCTGTTTGAAAAAGGCACTCTCACATTTCAGCAGGGTGCATACTGTCGCATGATCAGGATTCGGCTCTCCCTCTGCTTTTGGGGAGGAGCTGCTCTGAGACGCTGTGTTTGCAGCGGTGATTCTGGTGAGGGGTTAAGAGGCGAGATACAACATTAGGCTCAAACCTGGTCTGGAATTGGACAGATACTCAACCTCCATGCAGTGCCAGGAGCTCCTCGTGCGGGGCCTGAGCTTGGGGATGATCCTGGGTGGGGTAATGCACTTTATATGTCTCAGGAAGTCTCACGCTGCCTACGGCCGCTACGTGGACACCTCGGGCAGCTCCATGATGGTGCCCGCAAGGCTAGCCTGGTTCCTCCAGGAGCTTCCCGCTCTCCTGGTGCCGCTGCTTTTGATGCTGATCACGGATGGAAAACACAGCACCGGGAAACACCTGATGCTCTGGACCTTCTGCCTGCACTACTTCCAAAGGAGCTGCATCTACTCTCTGCTGACCAAAGGGCGGCCGTATCCGTTCAACATCATGCTGACAGGGATGGTGTTTTGCTCTATTAATGGCTTCCTGCAGGCACACTATCTGCTGCATTGTGCTACATATCACAACACATGGTTTTCTGATGCCTGTTTACTAGCCGAGATGGTGGAGAAGATAGTAAGAGTGACAGTTGGAGAGAAAGTAGAAGAGACCATAGAGGAGACAGTGGACAAGACAGGGAAGAAGAAGAAAGCATTAAGTGGAGCAGCCACCAGGTGTACTTTAAAAAGTGAGTGGTCAACCAAATGGCCATTCATTACCATAGGCACCAGCAGCTCCTACAACTGGTGCTCTGTTTGCAGACAGGAGAACTCAGGAATGGGAGTCAATATTCACAGTGACCACATTCTTCGCAGCCTGAGGAAACCTGGAGAAATTTCCTATAAAATCCCAAGAGGCGGCTTGTTTGAGTATGTGTCTGGTGCAAATTTCTTCGGGGAGATGGTACAGTGGCTGGGCTACGCTGTTGCTACCTGGTCCTTACCCACATTTGCTTTTGCTTTTTTTACAATTTGCTTCATAGGCCCGAGAGCCTATCACCATCACAGGTTCTATCATGAGAAGTTCAAAGATTTCCCCAGATCAAGAAGATCTCTCATACCCTTCATCTTTTGAGAAGATAAATGTAGTTGCGTTGCGTTCTGTCAGAAGAAAAGAATTCATCTTCTTAATTGCTACAGTGTAGACCTTTTTCCTTTTGGTTTGTTTTCATTACCTGATTTAGCATACAGTATGTGGGAATTATTGGCACTAATTGGAAATATATGACTTGAATATATGACTTGAATATGTTACCAGATTGTGTGTAATGGTTTTGACTTCCTGTATGATAAAGGATTAATCATATAACAGGACAATTTACTACAACTTAATCTTTTTTATTACTTGTACAGTATGTTATTGCTGTTGTTAGTATATTTGTGTGTAACTGTGTATATATCCCAGCTTAATATTAAGAGACAACTGTAAGTTGGTTGATTTACCCAAAAAAGTGTAAACTCTGTGACTCTGTGGTGCTATTAAAACATGAGCATCTCCGCCACCTTTGATTCAACCAATTGCATGATTTTGTGTAAAGGATTATCTGTTGGCTGAACAATGACTGTCAGCATGTTTGGTAAACCTGACTGAAATGAATCATTATTTTGGTGATGCTATGATGCATTATTTCACTTCATATTTAAAGAAGAAAATATAATGAACAGAATAATGAAATCATGTGTTTTTTTTATAAAATGCAAAATTGCATGCATTTTTTTTTTTTTGCGGCTAATCGATGACTCACCGCTATTTTACTGTAGTTGTCAATCACAGGCATTTCTGTTGAAAACAATGGCCAATCAGTGGTGATAACTGAGTTTTCTTGCGAATAAGCTCAGGCTCACTTTCTGTAGGTTACATAATCCATTCATAATTTGAAAAAGGTTTTGTAGAGGACCAATGTCCATGTATACTGCAAAGTTTCAGAAGTGACATTTAATTACGAGAATAAATCTGCTATATTCTTCTGTAAGTCACTCCAGAAATTGATATAATTGAAAGCAATAAAAGTGGCAAAAGGTCCTCTGCAGCCATCTACTGGTGATAGTGGTAATTTAATGTAATTTTCATTTGGAAAGTGTTTGTTTTCCATCAGATGTCAAAAATTGTCCACTAAAGCAGCAGGTTTTCCATGTTTTCTCCATGAATAAAAATGAGAAATGTAAATCTTCTTTAAAGTGAATTTACAGTACAACTCAGAAAATA
>TU81687
ACAACATTAGGCTCAAACCTGGTCTGGAATTGGACAGATACTCAACCTCCATGCAGTGCCAGGAGCTCCTCGTGCGGGGCCTGAGCTTGGGGATGATCCTGGGTGGGGTAATGCACTTTATATGTCTCAGGAAGTCTCACGCTGCCTACGGCCGCTACGTGGACACCTCGGGCAGCTCCATGATGGTGCCCGCAAGGCTAGCCTGGTTCCTCCAGGAGCTTCCCGCTCTCCTGGTGCCGCTGCTTTTGATGCTGATCACGGATGGAAAACACAGCACCGGGAAACACCTGATGCTCTGGACCTTCTGCCTGCACTACTTCCAAAGGAGCTGCATCTACTCTCTGCTGACCAAAGGGCGGCCGTATCCGTTCAACATCATGCTGACAGGGATGGTGTTTTGCTCTATTAATGGCTTCCTGCAGGCACACTATCTGCTGCATTGTGCTACATATCACAACACATGGTTTTCTGATGCCTGTTTACTAGCCGG

Function

symbol description
srd5a2b Predicted to enable 3-oxo-5-alpha-steroid 4-dehydrogenase activity. Predicted to be involved in steroid biosynthetic process. Predicted to act upstream of or within cell differentiation; sex differentiation; and steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in hindbrain; pectoral fin; and testis. Human ortholog(s) of this gene implicated in hypospadias and prostate cancer. Orthologous to human SRD5A2 (steroid 5 alpha-reductase 2).

NR:

description
Zgc:112208

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05923216_05928055.mRNA False 2916 mRNA 0.39 6 5922385 5929186
TU81687 True 490 TUCP 0.54 2 5923166 5924305

Neighbor

gene id symbol gene type direction distance location
CI01000012_05909453_05916000 MEMO1 coding upstream 6211 5909453 ~ 5916174 (+)
CI01000012_05856793_05862577 NA coding upstream 59743 5856316 ~ 5862642 (+)
CI01000012_05748899_05754466 ERLEC1 coding upstream 167131 5748899 ~ 5755254 (+)
CI01000012_05708007_05735678 MAP3K4 coding upstream 186400 5708007 ~ 5735985 (+)
CI01000012_05659039_05669397 NA coding upstream 252801 5659039 ~ 5669584 (+)
CI01000012_05946986_05984551 SLX4IP coding downstream 17800 5946986 ~ 5985959 (+)
CI01000012_06156417_06175135 NA coding downstream 225661 6154847 ~ 6175521 (+)
CI01000012_06182472_06192196 NA coding downstream 251821 6181007 ~ 6192613 (+)
CI01000012_06208439_06217101 BTBD3B, BTBD3 coding downstream 279253 6208439 ~ 6217914 (+)
CI01000012_06334114_06368535 SPTLC3 coding downstream 404163 6333349 ~ 6369091 (+)
G71668 NA non-coding upstream 986 5921193 ~ 5921399 (+)
G71637 NA non-coding upstream 78831 5843064 ~ 5843554 (+)
G71623 NA non-coding upstream 107436 5813517 ~ 5816605 (+)
G71622 NA non-coding upstream 111158 5810037 ~ 5811227 (+)
G71619 NA non-coding upstream 115600 5806521 ~ 5806785 (+)
G72484 NA non-coding downstream 98508 6027694 ~ 6027911 (+)
G72499 NA non-coding downstream 128038 6057224 ~ 6057425 (+)
G72516 NA non-coding downstream 217011 6146197 ~ 6146540 (+)
G72548 NA non-coding downstream 256361 6185547 ~ 6185835 (+)
G72551 NA non-coding downstream 266444 6195630 ~ 6195856 (+)
G71548 NA other upstream 360952 5550493 ~ 5561433 (+)
G71221 NA other upstream 381929 5538525 ~ 5540456 (+)
G71218 NA other upstream 384001 5535852 ~ 5538384 (+)
G71199 NA other upstream 505600 5413250 ~ 5416785 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1876917 7805248 ~ 7811902 (+)
G73578 NA other downstream 2437620 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4292769 10223697 ~ 10236276 (+)
G75533 NA other downstream 5215631 11144817 ~ 11145739 (+)
G76385 NA other downstream 6701569 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006777 srd5a2b coding NC_007124.7 CM002897.2 35484229 ~ 35497586 (-)