G150526


Basic Information

Item Value
gene id G150526
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9128897 ~ 9188112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203812
TGCTCTCCGTTTCATTCTCTCGCGCGCTCGCCCACTCTAcccatctttctctctatatatatctgtatctctcttcttttctttttatctttctctcactgCTGCGGTTTCAGAAACGGAcgttaaaaacagcagaaaggAAAGAAGTTTTAACCAAGAGCTTGAGCCAGACGGTCGGTGGTCGTGTGAAGATGCGGACCCTCAGATTCCCTGTGCTCGTGCTGGAGGACGGCAAGACGATCGTGGCTAACTGGAGTATGATCAGCATCACCTGCTTCACCAGGCCAGAAGTGCAGCACTACCAGCGCTCGAGAATCAACCACATAAAAGAAAGccgaagaggagagagaagcgagaagaagagaagagcgAGGGGGAGGGAGGGGAGATGAAGGATGGATAGAGATAGATGGATGAACTCTGAGCAGTCCGGCTCAGATTGTGATCGCCGGGGGCTCTCCTGCTATCTTCCTCCTCTgcagcccctctctctctccagcccgGCGAGCGTGCAGGCCCGCTAAGGCCAGCCTGGGTGAGCCGTCCTGGGCCTGAGAGGCAGCCTGAACTACCCTCCCTCGGTCAGCAGCACCTCCGGAGCCCACAGACAAATCAATAccagcacacagagactgatGCTGGATCACCCAAGCTAGCCCCCCAGCCGCGAGCCAAATGAcctcacacacacgcaaacacacacatacacacggtCAAAGATGctagcatatatatatagttatgtactttctctctctctctctcttacacacacacacggtcaaAGATgctagcatatatatatatagttatatactttctgtctctttcgtacacacacacacacacacggtcaaAGATgctagcatatatatatatatatatatatatatatatatatatatacatataaatatagttatgtactctctctctctctccccctctctcacaCAAGCAAACAATACTACACACTAGCAtacattcctctctctctgttcatctTTCTCACTCCTTCTCTCAGTCTCTTCCTCACTCCGCTCTCTCCAGTCTTCTTTATTCTTCTTCCTTTTTGCTctgtctccttctttctctcttctttcttctttctccctctgtatctctctggtTCTCCcgtttctcttcctctctcacttaTCCATTTTCTCCCTCTTCCTTTCTCCTGGTTTTTCTTTTACTTAGCCTCGGTCTTCCATTCTCTcttcttttgtctttctttctctgtctgtctcacacacacactgtaaaacacactaGTATACATGCAaagttttctctctgtctgcccCCCTTTACCTCAACAACACActttaaaacaacacacacaccctcacacacacacacacacacacacacacacaaacacacacagtagcaAAGACACCTCACAAGTCCTGACTCCCACACACctagccgtgtgtgtgtgtgtgtgttgtttaccTCGAGGGCATGTTATTTTGGACAAGCTTTCCACAACCCCAAACAGGCCtcaattatttttactgaacatGCCAAAAGGTCCAGGCTGGTATCCCCAAACCCCCACCCTGCTCCACCTgatgtctctctctcaatctctctacCTTCAGCCATGCCGCCTCCCACTCTcagcaagagagacagacagagagagagagacagagagagagagagattattcaAATATGTTTGTGCAGTGATGAACTTCCTCCCCCGAGTGTCTCGTTGCCCATTCAGTAGCATTCAGAGACTTGAAAGAAGAAAGCACTTAGCTGCACCATGCCATGCTGTGCTAACACTCCTCCACACTGCCAGGCTCCTTCTGTAATGACCACCTCCAACGCCACCAACCACAGCTCTCCCAGAAGAACAGCAGCCATCGGTCAGTCGAGCCCTGGGACACGCTCCGATTCGCTCTTCCCTAAAAAGACTTCGGAATGACTTAGGAATCAGCAAGAGACCAAGAATCTGCTCCAGCAGAAGTGATGAAAAACTTGACGATGTGGGCTGAAACAAACCTCAGCTAGCAAGTTCATTTCACTGTTCGGACGCAGAATAAATGAGGACAAAGCCGACTGAATGATTCCTCCGGTGAGGCCAAAACAGCATCACTCTGAAGACGTGACATCGCACAGCTCTCACTCAGGTCCAGCTCtgagagaagaagaggaaaacaTCAGAATTTCACAGCAGGACTGTGTAGTGTAGAATGGTGGTTGTGAATTACACACAAGCTGAAAAAATGAGTTTCTGTTGACCTTGTTACCTTTGCTCCTGAGTTTCTTTTGATTTAAACCAAATCCTAAAGGCCTTCatggcttttcttttttttgtattgtaaatGCCAAAGGAGAGGACTGAGCACTGTCTATACAAAAGGTAAGTACACAAAAAATAAGGTAAgtgaaaaacacacataaatatgctgtaagaatatatttttattgttaatgaatatGTAATGTTCAAAATTCATTGCTAACCATGATTtaaattagggatgcactgaatatttggcaactgaaaataTTTCGCAGAACATGGACAAATGTACCAAATAATTCATACTAAACAATgatccatttattttaaatcatatttcaatattagatttttttttctgaaaaacatGTTCATTATGTTCTGCTCACTTACAATTAACTAAATAATGTTCAATATCAGTCATCATTCTTAGCATCAGTTAACTAAGTAATATCTCTTCATGAATGAGCTGTTTTCCACCTGAAAGATGCAAGCAGTACAGGAATAACATAGTGACATCAtcctttctctgtgtaaatttcacaCAAATGTGACttggatagcactgctaaggtataTTTACAATTAGAATaccactgctaaggtaaattcatgattagaatagcaccactGAGATAAATTAATGatgagaatagcactgctgaggcacattttgtattagAGTaacactgctaaggtaaattcataactagaatagcactgctgaggttaattcatgattagaatagcaccgcTGAGAAGTTTATAGTGTGgttttgctgctgtttttctctgttggGATATTTACGGAAATgtttagtaaatgtttttaaatggtaGTTTTGTAATTACATTTAGGTTAATAAAGTAAATCACTGTTAATTgtcaaaggtaaaaaaaaaaaaaaaaaaaacacctgtgcAACCTATGAAACGTTGCCAAATGTTTTGtcTTAATAAGGTCTCGGCCCAAATTTCTCCgatttcagtgcatccctagtttATATACCTCTTATAGAGCTAGTAACCACATAACACTTATCCAACACAGTTACTGGTAACTTTAAAAATGCACCCAAGCACGCAAAGAAATCATGTTTTATATGATTCATATATTTCTAGATCTTTTTAGTCAGCGCTTGTCACACATCACAAGTAAAAGCTTCAAGCCTCTGTTTCATTTTGGTCTTAAAGTGATTTTCAATAAAGCTCTGATTGAGGTATTctacagtctgtgtgtgtgtgtatctgttcaTTTGAATAAAAGTCCATATGTAATGGGAAATATAAGTATATGAAAAAGGTGGTTGGGTGGTCTGATGACTAT
>TU203814
TGCTCTCCGTTTCATTCTCTCGCGCGCTCGCCCACTCTAcccatctttctctctatatatatctgtatctctcttcttttctttttatctttctctcactgCTGCGGTTTCAGAAACGGAcgttaaaaacagcagaaaggAAAGAAGTTTTAACCAAGAGCTTGAGCCAGACGGTCGGTGGTCGTGTGAAGATGCGGACCCTCAGATTCCCTGTGCTCGTGCTGGAGGACGGCAAGACGATCGTGGCTAACTGGAGTATGATCAGCATCACCTGCTTCACCAGGCCAGAAGTGCAGCACTACCAGCGCTCGAGAATCAACCACATAAAAGAAAGccgaagaggagagagaagcgagaagaagagaagagcgAGGGGGAGGGAGGGGAGATGAAGGATGGATAGAGATAGATGGATGAACTCTGAGCAGTCCGGCTCAGATTGTGATCGCCGGGGGCTCTCCTGCTATCTTCCTCCTCTgcagcccctctctctctccagcccgGCGAGCGTGCAGGCCCGCTAAGGCCAGCCTGGGTGAGCCGTCCTGGGCCTGAGAGGCAGCCTGAACTACCCTCCCTCGGTCAGCAGCACCTCCGGAGCCCACAGACAAATCAATAccagcacacagagactgatGCTGGATCACCCAAGCTAGCCCCCCAGCCGCGAGCCAAATGAcctcacacacacgcaaacacacacatacacacggtCAAAGATGctagcatatatatatagttatgtactttctctctctctctctctctctctccccctctctcacaCAAGCAAACAATACTACACACTAGCAtacattcctctctctctgttcatctTTCTCACTCCTTCTCTCAGTCTCTTCCTCACTCCGCTCTCTCCAGTCTTCTTTATTCTTCTTCCTTTTTGCTctgtctccttctttctctcttctttcttctttctccctctgtatctctctggtTCTCCcgtttctcttcctctctcacttaTCCATTTTCTCCCTCTTCCTTTCTCCTGGTTTTTCTTTTACTTAGCCTCGGTCTTCCATTCTCTcttcttttgtctttctttctctgtctgtctcacacacacactgtaaaacacactaGTATACATGCAaagttttctctctgtctgcccCCCTTTACCTCAACAACACActttaaaacaacacacacaccctcacacacacacacacacacacacacacacaaacacacacagtagcaAAGACACCTCACAAGTCCTGACTCCCACACACctagccgtgtgtgtgtgtgtgtgttgtttaccTCGAGGGCATGTTATTTTGGACAAGCTTTCCACAACCCCAAACAGGCCtcaattatttttactgaacatGCCAAAAGGTCCAGGCTGGTATCCCCAAACCCCCACCCTGCTCCACCTgatgtctctctctcaatctctctacCTTCAGCCATGCCGCCTCCCACTCTcagcaagagagacagacagagagagagagacagagagagagagagattattcaAATATGTTTGTGCAGTGATGAACTTCCTCCCCCGAGTGTCTCGTTGCCCATTCAGTAGCATTCAGAGACTTGAAAGAAGAAAGCACTTAGCTGCACCATGCCATGCTGTGCTAACACTCCTCCACACTGCCAGGCTCCTTCTGTAATGACCACCTCCAACGCCACCAACCACAGCTCTCCCAGAAGAACAGCAGCCATCGGTCAGTCGAGCCCTGGGACACGCTCCGATTCGCTCTTCCCTAAAAAGACTTCGGAATGACTTAGGAATCAGCAAGAGACCAAGAATCTGCTCCAGCAGAAGTGATGAAAAACTTGACGATGTGGGCTGAAACAAACCTCAGCTAGCAAGTTCATTTCACTGTTCGGACGCAGAATAAATGAGGACAAAGCCGACTGAATGATTCCTCCGGTGAGGCCAAAACAGCATCACTCTGAAGACGTGACATCGCACAGCTCTCACTCAGGTCCAGCTCtgagagaagaagaggaaaacaTCAGAATTTCACAGCAGGACTGTGTAGTGTAGAATGGTGGTTGTGAATTACACACAAGCTGAAAAAATGAGTTTCTGTTGACCTTGTTACCTTTGCTCCTGAGTTTCTTTTGATTTAAACCAAATCCTAAAGGCCTTCatggcttttcttttttttgtattgtaaatGCCAAAGGAGAGGACTGAGCACTGTCTATACAAAAGGTAAGTACACAAAAAATAAGGTAAgtgaaaaacacacataaatatgctgtaagaatatatttttattgttaatgaatatGTAATGTTCAAAATTCATTGCTAACCATGATTtaaattagggatgcactgaatatttggcaactgaaaataTTTCGCAGAACATGGACAAATGTACCAAATAATTCATACTAAACAATgatccatttattttaaatcatatttcaatattagatttttttttctgaaaaacatGTTCATTATGTTCTGCTCACTTACAATTAACTAAATAATGTTCAATATCAGTCATCATTCTTAGCATCAGTTAACTAAGTAATATCTCTTCATGAATGAGCTGTTTTCCACCTGAAAGATGCAAGCAGTACAGGAATAACATAGTGACATCAtcctttctctgtgtaaatttcacaCAAATGTGACttggatagcactgctaaggtataTTTACAATTAGAATaccactgctaaggtaaattcatgattagaatagcaccactGAGATAAATTAATGatgagaatagcactgctgaggcacattttgtattagAGTaacactgctaaggtaaattcataactagaatagcactgctgaggttaattcatgattagaatagcaccgcTGAGAAGTTTATAGTGTGgttttgctgctgtttttctctgttggGATATTTACGGAAATgtttagtaaatgtttttaaatggtaGTTTTGTAATTACATTTAGGTTAATAAAGTAAATCACTGTTAATTgtcaaaggtaaaaaaaaaaaaaaaaaaaacacctgtgcAACCTATGAAACGTTGCCAAATGTTTTGtcTTAATAAGGTCTCGGCCCAAATTTCTCCgatttcagtgcatccctagtttATATACCTCTTATAGAGCTAGTAACCACATAACACTTATCCAACACAGTTACTGGTAACTTTAAAAATGCACCCAAGCACGCAAAGAAATCATGTTTTATATGATTCATATATTTCTAGATCTTTTTAGTCAGCGCTTGTCACACATCACAAGTAAAAGCTTCAAGCCTCTGTTTCATTTTGGTCTTAAAGTGATTTTCAATAAAGCTCTGATTGAGGTATTctacagtctgtgtgtgtgtgtatctgttcaTTTGAATAAAAGTCCATATGTAATGGGAAATATAAGTATATGAAAAAGGTGGTTGGGTGGTCTGATGACTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203812 True 3588 lncRNA 0.42 6 9128897 9188112
TU203814 False 3420 lncRNA 0.43 6 9128897 9188112

Neighbor

gene id symbol gene type direction distance location
LOC103025531 LOC108427106 coding upstream 250093 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 345699 8777660 ~ 8783198 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding upstream 448037 8667922 ~ 8680860 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding upstream 548028 8522150 ~ 8580869 (+)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 609565 8495095 ~ 8519332 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 46569 9234681 ~ 9254117 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding downstream 90353 9278465 ~ 9359957 (+)
LOC103028184 LOC108427103 coding downstream 337221 9525333 ~ 9584009 (+)
LOC111194519 NA coding downstream 621214 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 641991 9830103 ~ 9837255 (+)
LOC103029650 NA non-coding upstream 15241 9104877 ~ 9113656 (+)
G150529 NA non-coding upstream 23163 9105317 ~ 9105734 (+)
G150469 NA non-coding upstream 242868 8885788 ~ 8886029 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding upstream 481706 8642368 ~ 8647191 (+)
G150317 NA non-coding upstream 488723 8639891 ~ 8640174 (+)
G150539 NA non-coding downstream 7220 9195332 ~ 9197449 (+)
G150540 NA non-coding downstream 9453 9197565 ~ 9199519 (+)
G150544 armc6 non-coding downstream 41825 9229937 ~ 9232543 (+)
G150545 NA non-coding downstream 44789 9232901 ~ 9233367 (+)
G150549 NA non-coding downstream 67192 9255304 ~ 9261355 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 472189 8648830 ~ 8656708 (+)
G150131 NA other upstream 1249596 7874640 ~ 7879301 (+)
G150099 NA other upstream 1323643 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1877531 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 2180961 6935341 ~ 6947936 (+)
G150579 NA other downstream 367547 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 663106 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 954012 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1003408 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 1132157 10320269 ~ 10363375 (+)

Expression


Co-expression Network