LOC103029650


Basic Information

Item Value
gene id LOC103029650
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9104877 ~ 9113656 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203818
AAATGGCTGACAAATAGAGAATTGTTTGTTCCACTGAGTgctgtattttaaagttgtttggCTTTTGAATATGTTCTGTTAGAATCTTTGCATtggtgtttcatgttttgtgttttagttgtaGTTCTTTACTTGTATTGTATGAGAATGTGTTTGTGCCTGCTGAGGTTTTAAGAAGGTTTGGAGCGTACATGGAAACCAAATCAGATGCAAAGCAGGAATACCCCGGACAGGAGGAACTGCCGTTTTCATTTTGTCCCTCTTAACTTTTGtgtgaggatttgatggcaTTCAGCAATAAAAGCATGCAGTTTAGGTGAAGCCAGGATGTTGGCTGATCCCCCACCTTAAATCATCttcaactcatccacaactccacAATCGCACGCAATCCAATCCAAAAGTATGGGATGGAACTCAATCAATCCAGAGAACAAAATACacaaggactagacaagctgaagtgattcattagaaggggtgacCACAAATCTTtagacatatagtgtatatacatattatattaacaGAGAGAAAATCTGGTCGTAGGCTATgttttcctttcaatggaaaCTCTCCAGTGAAAATGCTGTGTAGAAccagactaggcttaatccctgtcttgGAAAGCTGCTCCTAaggtatttaatgtatttgtgatgtatttattttttatttaagtggcTATGCGCTTAAGGTTTTCACTAAAAAATGCTGATTGTTTATCTGATTAGATTTAATAGCTCcagaaatacttgttttttgtttttttgtgtttttgactttttttgacatgcgaatctggcagttgttcttcaCATTGTAGCAAAATCTCACTATGAATCAtttaatagaaatgctccaaaatgacttggaataaatgatttatatactgttgaacagacca
>XR_453433.3
TGGCTGACAAATAGAGAATTGTTTGTTCCACTGAGTgctgtattttaaagttgtttggCTTTTGAATATGTTCTGTTAGAATCTTTGCATtggtgtttcatgttttgtgttttagttgtaGTTCTTTACTTGTATTGTATGAGAATGTGTTTGTGCCTGCTGAGGTTTTAAGAAGGTTTGGAGCGTACATGGAAACCAAATCAGATGCAAAGCAGGAATACCCCGGACAGGAGGAACTGCCGTTTTCATTTTGTCCCTCTTAACTTTTGtgtgaggatttgatggcaTTCAGCAATAAAAGCATGCAGTTTAGGTGAAGCCAGGATGTTGGCTGATCCCCCACCTTAAATCATCttcaactcatccacaactccacAATCGCACGCAATCCAATCCAAAAGTATGGGATGGAACTCAATCAATCCAGAGAACAAAATACacaaggactagacaagctgaagtgattcattagaaggggtgacCACAAATCTTtagacatatagtgtatatacatattatattaacaGAGAGAAAATCTGGTCGTAGGCTATgttttcctttcaatggaaaCTCTCCAGTGAAAATGCTGTGTAGAAccagactaggcttaatccctgtcttgGAAAGCTGCTCCTAaggtatttaatgtatttgtgatgtatttattttttatttaagtggcTATGCGCTTAAGGTTTTCACTAAAAAATGCTGATTGTTTATCTGATTAGATTTAATAGCTCcagaaatacttgttttttgtttttttgtgtttttgactttttttgacatgcgaatctggcagttgttcttcaCATTGTAGCAAAATCTCACTATGAATCAtttaatagaaatgctccaaaatgacttggaataaatgatttatatact

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU203818 True 907 lncRNA 0.36 3 9104877 9113656
XR_453433.3 False 891 lncRNA 0.36 3 9104880 9113643

Neighbor

gene id symbol gene type direction distance location
LOC103025531 LOC108427106 coding upstream 226073 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 321679 8777660 ~ 8783198 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding upstream 424017 8667922 ~ 8680860 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding upstream 524008 8522150 ~ 8580869 (+)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 585545 8495095 ~ 8519332 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 121025 9234681 ~ 9254117 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding downstream 164809 9278465 ~ 9359957 (+)
LOC103028184 LOC108427103 coding downstream 411677 9525333 ~ 9584009 (+)
LOC111194519 NA coding downstream 695670 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 716447 9830103 ~ 9837255 (+)
G150469 NA non-coding upstream 218848 8885788 ~ 8886029 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding upstream 457686 8642368 ~ 8647191 (+)
G150317 NA non-coding upstream 464703 8639891 ~ 8640174 (+)
G150305 NA non-coding upstream 512502 8592141 ~ 8592375 (+)
G150292 NA non-coding upstream 519821 8582444 ~ 8585056 (+)
LOC111194515 NA non-coding downstream 8372 9122028 ~ 9164242 (+)
G150526 NA non-coding downstream 15241 9128897 ~ 9188112 (+)
G150534 NA non-coding downstream 37957 9151613 ~ 9152055 (+)
G150535 NA non-coding downstream 44454 9158110 ~ 9160305 (+)
LOC111194516 NA non-coding downstream 51180 9164836 ~ 9185937 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 448169 8648830 ~ 8656708 (+)
G150131 NA other upstream 1225576 7874640 ~ 7879301 (+)
G150099 NA other upstream 1299623 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1853511 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 2156941 6935341 ~ 6947936 (+)
G150579 NA other downstream 442003 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 737562 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1028468 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1077864 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 1206613 10320269 ~ 10363375 (+)

Expression


Co-expression Network