G150565 (LOC103028498,LOC108427154)


Basic Information

Item Value
gene id G150565
gene name LOC103028498,LOC108427154
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9415552 ~ 9434530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203890
ACCAGGGTAAACACTGCCAGGTTTGGATGCTGGGTATCCTGCGTTCTCCTGGTTATAATCCTCACCAGGAACTGCTGGATAGACTGAGGATGGGAGGCCAGGGGGCACTTTCCTGATCTTCTTCGGCTGGTTatCGAGAACAGCGTCCGGGGGCCTCCTGCGGTTTGCATACGAGCTATAGAACGGGGATGTTGATTTGAGACCCGTGGAAGGAAGGCCATCAGGACTGGACATGGGCATTTCCCCTGGTAGAAACTGTGAGCCGAAAGGGTAAGGTCCTCTTTCTGATTTACCTCCAATCCCTGAGCTGTAAGGGGACATACTTTCATGTTCATTGAAGTGGGCTCCATCTCCAAATgcCCGTGAACTGAAGGACGGACTGTTCTGTTCTCCCGGCCCCCAGGAGCCTGACCCGCTCCGGTCATCCAAACCTGAGCCTGCGAATGGCGTGCTGGCTAGAGTAGCAGATCTGTTCTTTCCATTCGGCACTGGAAGAGGAAACATCACACTGAAGTCCAGCAGATCGCTGAGCTCCTTGTCTGTTGCTGCGGTCATTCTGATGTTACTATCAGTCATTCTTCCTTagtacacacgcacacacactctaagAGGC

Function

NR:

description
transcription factor E2-alpha isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203890 True 613 lncRNA 0.53 8 9415552 9434530

Neighbor

gene id symbol gene type direction distance location
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 55595 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 161435 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 536748 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 632354 8777660 ~ 8783198 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding upstream 734692 8667922 ~ 8680860 (+)
LOC103028184 LOC108427103 coding downstream 90803 9525333 ~ 9584009 (+)
LOC111194519 NA coding downstream 374796 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 395573 9830103 ~ 9837255 (+)
LOC103025670 NA coding downstream 439436 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 464798 9899328 ~ 9926814 (+)
G150562 NA non-coding upstream 9086 9402053 ~ 9406466 (+)
G150558 NA non-coding upstream 16130 9395403 ~ 9399422 (+)
G150559 LOC108427158 non-coding upstream 21492 9386792 ~ 9394060 (+)
G150555 mex3d,mex3b,LOC108427159,LOC105905817 non-coding upstream 33753 9368766 ~ 9381799 (+)
G150549 NA non-coding upstream 154197 9255304 ~ 9261355 (+)
G150568 NA non-coding downstream 17391 9451921 ~ 9452127 (+)
G150569 NA non-coding downstream 36942 9471472 ~ 9486736 (+)
G150571 LOC108427153,LOC100697571,LOC103366683,LOC102792644,LOC102194177 non-coding downstream 39807 9474337 ~ 9478463 (+)
G150572 NA non-coding downstream 47287 9481817 ~ 9490264 (+)
LOC111194518 NA non-coding downstream 75324 9509854 ~ 9512555 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 758844 8648830 ~ 8656708 (+)
G150131 NA other upstream 1536251 7874640 ~ 7879301 (+)
G150099 NA other upstream 1610298 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2164186 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 2467616 6935341 ~ 6947936 (+)
G150579 NA other downstream 121129 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 416688 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 707594 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 756990 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 885739 10320269 ~ 10363375 (+)

Expression


Co-expression Network