G150580


Basic Information

Item Value
gene id G150580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9599460 ~ 9600049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU203914
AGGCATATTCAGGGCATATTCATCCACACAGCTGGGATATCATTGTCAAATCATTGCTGTGACATTGAAAATAGGCAGGATTCAAAGGCTCCCGTTCTTATCAGCGCACGGAAATTCTTTCAGCGGCTCTGAATGAGGGCGTTTTGTGGTTTATGGACTACATGATGGAATACTGATGACCTCGCTGCATTAGTGTTTAATATACGTGGGTCAGAATGTCTCCTGAATGAAAGCGCAACACACTCGGTGACCTTGAGATGAAAGGGAGGCATGCATAAATATCAAAAAGGCTTTATTTGAGCTATTAGGCTGCAGCTCACTAGCCTGTGTGCTCGAGTGTCTGAAGTGGTGTCCTggggtgtctgtgtgtctgcagATGACTGCTGGTAATGAgtatgagtttgtgtgtgtgtatatgtgtgtacataagtgtgtgtgtgtgtgtgtgtgtgtgcgtgcagTAGAGAAATTCTGTTTCTTTTCTGTTGCTTTTGCTGATTATGTCTTTCTGAAGATTTTTTgtatgtgaagaaaaaaagatgcattaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203914 True 550 lncRNA 0.43 2 9599460 9600049

Neighbor

gene id symbol gene type direction distance location
LOC103028184 LOC108427103 coding upstream 15451 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 239503 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 345343 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 720656 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 816262 8777660 ~ 8783198 (+)
LOC111194519 NA coding downstream 209277 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 230054 9830103 ~ 9837255 (+)
LOC103025670 NA coding downstream 273917 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 299279 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 316405 9916454 ~ 9917473 (+)
LOC111194518 NA non-coding upstream 86905 9509854 ~ 9512555 (+)
G150572 NA non-coding upstream 109196 9481817 ~ 9490264 (+)
G150569 NA non-coding upstream 112724 9471472 ~ 9486736 (+)
G150571 LOC108427153,LOC100697571,LOC103366683,LOC102792644,LOC102194177 non-coding upstream 120997 9474337 ~ 9478463 (+)
G150568 NA non-coding upstream 147333 9451921 ~ 9452127 (+)
G150586 NA non-coding downstream 59011 9659060 ~ 9667287 (+)
G150663 NA non-coding downstream 165022 9765071 ~ 9765448 (+)
G150669 NA non-coding downstream 187419 9787468 ~ 9790595 (+)
G150671 NA non-coding downstream 220537 9820586 ~ 9820791 (+)
G150673 LOC107552671 non-coding downstream 255085 9855134 ~ 9857155 (+)
G150579 NA other upstream 32363 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 942752 8648830 ~ 8656708 (+)
G150131 NA other upstream 1720159 7874640 ~ 7879301 (+)
G150099 NA other upstream 1794206 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2348094 7249165 ~ 7251366 (+)
G150674 tpgs1 other downstream 251169 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 542075 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 591471 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 720220 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 809744 10409793 ~ 10442243 (+)

Expression


Co-expression Network