G150663


Basic Information

Item Value
gene id G150663
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9765071 ~ 9765448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU204017
gcacggtggcgcagtgggtagcacttccgcctcacagcaagacggcctgggttcgattcccggctggggcgtcccgggtctttctgtgtggagtttgcacgttctccccgtgtctgcgtgggtttcctccgggttctgcggtttcctcccacagtccaaagacggcacgttcaggctaattggaacttggttgaaattgccccttaggtgtgagtgtgtgagtgaatgtgtctgtgtgtctgtctgtgtctgtctgccctgcaatggattggcggcctgtccagggtgtatcctgccttccgcccgatgccggctgggataggctccagcacccccctgcgacccttaatggatgaagcggttgataatgacttgact

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:1990234 transferase complex cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU204017 True 378 lncRNA 0.58 1 9765071 9765448

Neighbor

gene id symbol gene type direction distance location
LOC103028184 LOC108427103 coding upstream 181062 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 405114 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 510954 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 886267 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 981873 8777660 ~ 8783198 (+)
LOC111194519 NA coding downstream 43878 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 64655 9830103 ~ 9837255 (+)
LOC103025670 NA coding downstream 108518 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 133880 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 151006 9916454 ~ 9917473 (+)
G150586 NA non-coding upstream 97784 9659060 ~ 9667287 (+)
G150580 NA non-coding upstream 165022 9599460 ~ 9600049 (+)
LOC111194518 NA non-coding upstream 252516 9509854 ~ 9512555 (+)
G150572 NA non-coding upstream 274807 9481817 ~ 9490264 (+)
G150569 NA non-coding upstream 278335 9471472 ~ 9486736 (+)
G150669 NA non-coding downstream 22020 9787468 ~ 9790595 (+)
G150671 NA non-coding downstream 55138 9820586 ~ 9820791 (+)
G150673 LOC107552671 non-coding downstream 89686 9855134 ~ 9857155 (+)
G150681 NA non-coding downstream 104251 9869699 ~ 9871616 (+)
G150704 NA non-coding downstream 190018 9955466 ~ 10016966 (+)
G150579 NA other upstream 197974 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1108363 8648830 ~ 8656708 (+)
G150131 NA other upstream 1885770 7874640 ~ 7879301 (+)
G150099 NA other upstream 1959817 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2513705 7249165 ~ 7251366 (+)
G150674 tpgs1 other downstream 85770 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 376676 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 426072 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 554821 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 644345 10409793 ~ 10442243 (+)

Expression


Co-expression Network