G150669


Basic Information

Item Value
gene id G150669
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9787468 ~ 9790595 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU204028
gtgcgcgcaggtgagagcgtgtgaactcgctgaaatgcgtgtgtcagtgtgacttgagaacactgactatagatcacagtgaggtggattaaaaatctttaaacttataattgactacacctgttgctttccattgaattaaaaaaacatctttctctcagataaagtaaacacaagcgtgtttctgactaaaataaaagcttttcaggagagatataagttatgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaataaacatcacttatctaaccagcctgtactgatttctgccccccaataatgctttcaataacctctaatagcctttaatagtcttcagtagcctttaaaagacttacctggcggccgtggtgtgtccactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgcctccgtgtcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgagctctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggagcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataatat
>TU204029
gtgcgcgcaggtgagagcgtgtgaactcgctgaaatgcgtgtgtcagtgtgacttgagaacactgactatagatcacagtgaggtggattaaaaatctttaaacttataattgactacacctgttgctttccattgaattaaaaaaacatctttctctcagataaagtaaacacaagcgtgtttctgactaaaataaaagcttttcaggagagatataagttatgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaataaacatcacttatctaaccagcctgtactgatttctgccccccaataatgctttcaataacctctaatagcctttaatagtcttcagtagcctttaaaagacttacctggcggccgtggtgtgtccactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgcctccgtgtcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgagctctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggagcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataatat
>TU204030
gtgcgcgcaggtgagagcgtgtgaactcgctgaaatgcgtgtgtcagtgtgacttgagaacactgactatagatcacagtgaggtggattaaaaatctttaaacttataattgactacacctgttgctttccattgaattaaaaaaacatctttctctcagataaagtaaacacaagcgtgtttctgactaaaataaaagcttttcaggagagatataagttatgtgtaaatatttataagacaatacctgacaaaatctgttttaatgacgttaataaacatcacttatctaaccagcctgtactgatttctgccccccaataatgctttcaataacctctaatagcctttaatagtcttcagtagcctttaaaagacttacctggcggccgtggtgtgtccactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgcctccgtgtcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgagctctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggagcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204028 True 850 lncRNA 0.40 2 9787468 9790595
TU204029 False 850 lncRNA 0.40 2 9787468 9790595
TU204030 False 850 lncRNA 0.40 2 9787468 9790595

Neighbor

gene id symbol gene type direction distance location
LOC103028184 LOC108427103 coding upstream 203459 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 427511 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 533351 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 908664 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 1004270 8777660 ~ 8783198 (+)
LOC111194519 NA coding downstream 18731 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 39508 9830103 ~ 9837255 (+)
LOC103025670 NA coding downstream 83371 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 108733 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 125859 9916454 ~ 9917473 (+)
G150663 NA non-coding upstream 22020 9765071 ~ 9765448 (+)
G150586 NA non-coding upstream 120181 9659060 ~ 9667287 (+)
G150580 NA non-coding upstream 187419 9599460 ~ 9600049 (+)
LOC111194518 NA non-coding upstream 274913 9509854 ~ 9512555 (+)
G150572 NA non-coding upstream 297204 9481817 ~ 9490264 (+)
G150671 NA non-coding downstream 29991 9820586 ~ 9820791 (+)
G150673 LOC107552671 non-coding downstream 64539 9855134 ~ 9857155 (+)
G150681 NA non-coding downstream 79104 9869699 ~ 9871616 (+)
G150704 NA non-coding downstream 164871 9955466 ~ 10016966 (+)
G150705 NA non-coding downstream 199879 9990474 ~ 9998264 (+)
G150579 NA other upstream 220371 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1130760 8648830 ~ 8656708 (+)
G150131 NA other upstream 1908167 7874640 ~ 7879301 (+)
G150099 NA other upstream 1982214 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2536102 7249165 ~ 7251366 (+)
G150674 tpgs1 other downstream 60623 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 351529 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 400925 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 529674 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 619198 10409793 ~ 10442243 (+)

Expression


Co-expression Network