G150673 (LOC107552671)


Basic Information

Item Value
gene id G150673
gene name LOC107552671
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9855134 ~ 9857155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU204034
AGGAGAAAACACACTTACTGTTGAGACGTAACACAACACTATATAGGACAGTATAAACTTCAGGGTTCACCTTGTacttttgcattttattattagacTTTATCCAATGTTATCCAATCCAGTGTTATACAGCTTCTTTTGTCACAGTCATGTcaaactaaataattcatataaCAACCAAATATCACAAGGTTTCATAAAACTCATTAAATGAAGACACCACACGACACGTTTGACAAACAATACCACCACAATAATATACAACTAAAAAATAACCTtattaaaaacgtaaaaaaaagagatttagaCTCGTTATTACTGGTCTAAATTAAATATCTAGctaataattaaagaaatagcTCTAAAGTGTCCTGATTTGTAGTGCAATGGTTCTCAGCAGCCAAAGTCCAATAggaacctatatatatatatatattagttctcttttcacattaaattatatattatattcataaGCTTCATTATAATTAATACAGCTCAATGTGCATTCAATAGCCATTGAATCTTCTCTACAACAACttcaatatatttttagcaATAACAGTGGTAATTAcccacattttacacattttcaaaTAGCCCTGAAATCCAATAGAATCCCAGTAAACAGTGACTTAAACTGAGCATCAGCACCTTTTACACAAATTGCTTATTGGTCAAGTAGCGTTAGTGCATATGAATTTATTATACCATattgtaaaatacaaataattctcccttaaaattcacaaaaactaatgataaaaaagaaaatccctTTTATGAACACAGGAATCATGCAATAGATTTTATACTTGGAACAGCATCTTGCTCACTGATCCCCTTGGTCTGAACACAGTGATAGCCGTTAGTTAGCTGGGTGTTCTTTGCGGGTGACGTTTTGTCGTAGACCTCATTTTTGTGGCAGTGAAGGAAGCTTCTCTTCATCTTGTGCTCGAGCTGCATGTGGTTCTGAGGGTGGAGACCGAGGCAGgctctgtgtaaaaaaCTCATGACGTTTTCGATGCAGGCTCTCTGGCGGAAGAAGGCGTTGACCACTGGTGCTCCCTGTGGTACGAGCGGGGCCTTGCAGAGGAAGCTGAGCAGAGAGAGGACGCTGTGGAAGCTCTGGAAGGATCTGTCCTCCTGAGTGCAGAACGTGATTCTCTGACACAGCTCGGTCAGGATCACCAGGTCCAGGATGATGGGGCTGGCCAGCAG

Function

NR:

description
PREDICTED: inositol-3-phosphate synthase 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204034 True 1221 lncRNA 0.38 2 9855134 9857155

Neighbor

gene id symbol gene type direction distance location
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding upstream 17879 9830103 ~ 9837255 (+)
LOC111194519 NA coding upstream 35964 9809326 ~ 9819170 (+)
LOC103028184 LOC108427103 coding upstream 271125 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 495177 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 601017 9234681 ~ 9254117 (+)
LOC103025670 NA coding downstream 16811 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 42173 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 59299 9916454 ~ 9917473 (+)
LOC103032638 LOC101168737 coding downstream 185571 10042726 ~ 10049750 (+)
LOC111194527 NA coding downstream 194165 10051320 ~ 10054422 (+)
G150671 NA non-coding upstream 34343 9820586 ~ 9820791 (+)
G150669 NA non-coding upstream 64539 9787468 ~ 9790595 (+)
G150663 NA non-coding upstream 89686 9765071 ~ 9765448 (+)
G150586 NA non-coding upstream 187847 9659060 ~ 9667287 (+)
G150580 NA non-coding upstream 255085 9599460 ~ 9600049 (+)
G150681 NA non-coding downstream 12544 9869699 ~ 9871616 (+)
G150704 NA non-coding downstream 98311 9955466 ~ 10016966 (+)
G150705 NA non-coding downstream 133319 9990474 ~ 9998264 (+)
G150698 NA non-coding downstream 153095 10010250 ~ 10032076 (+)
G150709 LOC108427146 non-coding downstream 158056 10015211 ~ 10024979 (+)
G150674 tpgs1 other upstream 2280 9851218 ~ 9852854 (+)
G150579 NA other upstream 288037 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1198426 8648830 ~ 8656708 (+)
G150131 NA other upstream 1975833 7874640 ~ 7879301 (+)
G150099 NA other upstream 2049880 7769684 ~ 7805254 (+)
LOC103031168 NA other downstream 284969 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 334365 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 463114 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 552638 10409793 ~ 10442243 (+)
mau2 mau2,LOC106573592 other downstream 765504 10622659 ~ 10635541 (+)

Expression


Co-expression Network