CI01000012_06156417_06175135


Basic Information

Item Value
gene id CI01000012_06156417_06175135
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6154847 ~ 6175521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_06156417_06175135.mRNA
ATATAAATATCAGTGGAGCCTTTGATCAACAGGCTTAACAACTGGCTCTTAAAAAAGTACTGGAGCATGGTGACCTTTTCTTCTGCATGGAGGGCTTGATACAGTGCTGACAGTTTTTCTGCTCCAACTGTGCTCAAAGGCATTAGTGATAATTAAAACATTATGATTTGTGCTTGCAGGCATTTTATTGGCCCTGAAATTTAAAGGTTATACGAAAGGAATCCTCTAACAGCAATACTTTCATTTTGTGTTTTTATAAATATATACATTCTTTGTACTGTAAACCTTATTTGCAGTTGTAACTCAGATAAGGTTGTAACTCTTGTTATGCATACTGCCGTTAAAAAGTTTAGGGTCAGTATGATTTTATTTTATTTTTTTAAATGATTTTGAAAGAATTTGTTTGATCACAAATACAGCAAAACATGTTTTAAGTTCTTTTCACCATTATCAGAAAAAAAAAAGCAAGTGATCGCACTGGCGCCTTCACCGAACCCTGAGGGTTATTATTATGAATTATTATTACAATATAAAATAAATTTTGTATTTTAATATATTTTAAAATGTAATTTATTTCTGTGATGTCTAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTCACATGATCCTTCAGAAATCATTCTAAAATGCTGATTTGGTGCTTAAGAAACATTTATCATTACCATCAATGGTAAAAACAGTTGGTGTGCTGCTTAATATTTTTGTGGATACATTTGTATTCAATATTTTATTCTTTGATGAATAGAAAGTTCAAAAGGACAATTTTGTTTTTTATAAAACAATGTAAGTCTTTACTATCACTTTTGATCAATTTAGTGTGTCCTTGCTGAATAAAAGTATTAATTTCTTAATTTTCTTTCATTTTGGTTCTAAAACTTGTTTAAACAAGTGTGTGTGTGTTTGTGTGTGTGTGTACATTTCCTCAATAAGTATTTATACAATGATCAAATGAAGGAAAAGAGCATTATAACCAGGCAAATTATGTTTGTTTTTAGTGACCTCCTCATGTATCAGATGTACCAGAAAGCTTAGCATTAGCAGCATCATAGCAACTCTGTACTGAGTGGAACAACTGACCAAACAAGATATACCTAAACTAGTACAATTTATGATGTAGTTTCATATATTGCTTTTGCCTCTTTCTAAATGAACTGTAATTTTTCTGTCGGTAAGGTCAGCTATGCTCTTAATTTTATTCGCACATCTCTTTGAGCGCAGAGCCGTGTCCTTAGTACTTTCCATATGAAAGGCCCTTAATTGAAACTAGCATTCATCTCAAGTATTCATCGAAGCCAAAGCATAAAGCCTCGTTCTATTCTCTTTCAGGCCACTGCTAAGCAACAACCTACATAGGATTTATTTTTTATTGCTCGGAAGGGTTTCGGTGAGAGGGTCTTGCATATTGATGCTTTGAGGGGGTCTGTTTTCCTTTCGATGAAGGTTTAGGTGATAGAGGTGAAAAAGCCATGCTTTTCTGTCTCTGATCCTCAGACTTTTAGTTTCTTCTGGGACTGAGAGGGTCAGGGAATGGGGAGGAAGTAGCGATGGAAATGGCAAAGCATGCAGATAACCGACATTCCAGGCGAGAAAACATCATCGGCGTTGTACAAAGGTTCTTGTGTTGCTCTTGCTTTCGGACTGTTGAGAACGACTGCTTGGAGTACAATCAGGAAAAGCCACAAAATCCCAAGCCTGTCGTGGATGAGGAGAGCGTCCATATCGTTGTTGAAGATTTGGGAATAGACAACCCTGTATTTAGCCTCGTTGAAGTTGAGCGCTGCGGGCCACCTCAACCGATCACCATTGGCCGTTCTGCTAGTTCTGTGTCTGTGTGCCAAAGAGCAGCGCTAAAGAAGAAGCTTGCACCACTTTCCTCTTTACCGTTTCAGCCCAGAGTGATCCAGACCAATGAGAATGACTCTGCTCTTGACTCTCTTCTGTATGGTTCTAGCAGCACTAATGTTGGAGATGGTGGTCTTCTCACACCACCGGTCATTAACCTCATACCTCCGACACCTTCCGACGTAATAGACGATGACCAGTTCTTCGACATAAACTCAGAAGAAGAAAGCCTGCAGCAAACTTCAGGCAGTGAAGGAGTGGACAGTATCGGCAGTGCTGCTACAGGAGAACAGGAAAGCGAGGAAGATGTAGACCTAGACGTAGAGTCTGAAGGTAACCGTGAGATCAAAGATGAAGAACATCCACAGGAGGAGCCTCAAGAGGAAGAAACGACCGAAAAGAACAGCGTGGACAAGTCTACAATCCACTTCCTGCGTAGCTCCTTTCAAGTACCCCCTCTTCCTGAATACCCTCGAAAAAGAAGCCTCAATACTGGAATCAGTTTGCTGCAGTTCACTGAACATAATCTGGGTGTGGTTTTCAGCAGAAAGGGCACAGTTCGGATGGTGTGGGTGGACATGCCAATGTGCAGGTCTCATCATGTACAAAGCAACTCCTCACAGCAAAGATATTTAGACCCTTTAGTGAAGGAAATGACACCCACTGAGGAGCTGTTTTGTGACCAAGGGGTAATCTGTTTAGGACAATGGTGTCTGTGTACAGCAAGTTTGGTTTGGAGGAAACTGTATTCTCTGGTGCTGTGTTTCACACTGGTCCAGAGTACAGTGGGGGCCCTGTGGAGACTGGGGAAACAGCTGGCAGGGCGGAAAGACCTAGATACTTCCCACGATCCCGAAGGCCTCTCGTGCTCTGATCCTCTGAATATCTGTACCTCTACCTCCTTCGGCCACGTGTCTTGGGACAGACTCTGCACATATCCTCTTCCTGTTCACTGTCTAGAACGACCAGAGGCTGTCAGAGGGCCGACTTCACCGCACAGACCGTGTGAAGTGGCCCAGTTTCTGAAAGCCTCCTGTCCTTTGCTGGAGCATTTTAGCTCTGTCTGGGGACTAAACACTGTCTCGCTTTCCTATTTGAAATCATTATCTTTTGTGCTTTTGTATTTTCTGGCAGAGAGTTCATTGGAGGGATGGGTGGGGTCTTATGTGATGCTCTGGGTCTTGTTCACACACCGTTTGTGGAGACCCATTGATGTGCTATGGGAGGTGGTCAATGACCTGAGCAACAAGGATGCCAGCAGCCATGAGTTGCTAAAGGAAGAGTTGAGGCTTCTACCGATGAGCAGTAAGATAAGCATGCTAACACACCAAAAGAAACCAGCTACTAGGTCCTGTAGTTTGGGCGATATGGTGCCGAGAAGTCACACTTTTCACTCCACATGCCAAGGGCAAGATGAAATCCTTGAAGATGAGGAATCCCCACGTCAAAGAAGGATAACTGTTGCATCCTACATTCCCCAGTCAACAGACCAAACTGGAGAAAGTGCAGTGAAGCAGGATTCTAATGGGTACAGTGCCAAAACTTTAGCAGAGCTGAACACGGAGGAGGTCTGCCAGTGGTTTAGTAATATTGGTCTACAGAAATGCCTGCCCTTCATTAGAGAAAGGTTTGGCCCACACAATGTTGAGAAATTCACAGCGGCTTTGGTGTCCATGACCAAGTCAAAATCTTCTCCTCAAGTTAGCAGCAACATGAACCGATGCTCATTTAAATTCAGACAGAAAGAGCAAAATGCTAGATTTCAGAAGAACTCACATCTCATTGAAATCACAGTCAATGCGTTGGATCGTACAGTTCATTTAAGGACACCTAAAGAGACAAGTGTGGGAAAAGTAATGGAGTCCTGCCTGAGGATGCTGGGAATTAATGAAGACAAAGATCACTTCAACCTGAAAAGCAAAGAAGATCAGCCATTTAGTCTTGCATTTGGAGAGAATCATATATGGCTTGTGGCTTATGAGTTCTCCCCTGAGCAGCAGATTGGAGATTTGCCTGGCTCAGAAACAAGACTAATGGAGCTTCACTTGTGTAGGAAGAAAGATGGTCCTGATTCCCCAAATAACATTCATACCGCCGACGATATTCAGAGCAAAAATCTGCTAAACAACACCGGCAAGATTCGAGAGCTAAACCAACAGGTGGCCTCCCTTCAAAATGTCATCATACAGGTTCAGGAGCTTTACCATGGCCTGGTGGCCTTCTGTTCAGAGCTGAAGAAGATGGAGGGAGACATGGATGCAGTGCAAACAGACAGCTTGGAAGTGAAGAGGCGTCTCAGCGAAGCCCAGGACAGTTTGAAGAGGAAGAGACAGAGCCTTCAAACACTCAGGGACAGTCTTAACACAGTACCAGTGCAGAAGAATAAGCCATCAGAGGTCCGACTTCTGGAGAAGATGAGGGTGAACTGCCAGGTGTTTAAAGACGAGATCACACTGGTCCACCTAAATCGGCAGGTGGCTCACCTGCGTGAAGTTCTGGAGAAGACCCAGGCCAAGGAGAAAGCTAAGAGGAAGAGCCCTACTCTGACTCAGCTAGTCTCTTTGCAGTCTCCTGTCATGTTGGTGGCCACCCAAGTGAAAGCAGACCCAGACGGTCATTATGGTTTCTCTGCACGCTGGGTAGAGGGCCAGGGATTGATGGTGGTACAGACTGAGGGTACTAGTCTCTGTCTGAATGACAGGCTGGTGGAGGTAAATGGGGTCAGCGTCTTGGGGAGCACTGAGGATGAGCTGGAGTTGCTGCTCAAGACTCACATTGCCCACATTATTGTCCTACGCCAACTGGCCCAAGAGCATCCACAGGAAAACCCTTCTGCAATCAGTGATCACCAGGACATACAAGTGCTGCAGAAACACCAAGCAATGTAAACCAACTAAATGCTGTCTTTCCTGTCAATAAGAAGAAACACTGTCTTTCCTAACACTTTCTTTCATGTATTTCTGCAGAAACATAGTCAGACACATCTGAGACAATCATATCTGATGTTTTATCCCACTTATTAACGTAATGACATTTGTCTTGTAAGAGAAGAGGTTTATATGTTCACACTGCATTGCATTCTCTGGGTCATTTCGGGGCAGTTTCAATTTTGGGAGGGTATGACTTCATGTTTTCGGGTTGATACTAATGTAATAGCCATAGTCTCATTTAATGGGTGGGTCAGTCAAAAATTGCTCATAAAAATGGCAATTGCATGGGAAAAAGGCATTTTGAATTCTAAATTGCATTCAACCATGAAGGTCAAGTTAGCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_06156417_06175135.mRNA True 5142 mRNA 0.43 22 6154847 6175521

Neighbor

gene id symbol gene type direction distance location
CI01000012_05946986_05984551 SLX4IP coding upstream 168888 5946986 ~ 5985959 (+)
CI01000012_05923216_05928055 SRD5A2B coding upstream 225661 5922385 ~ 5929186 (+)
CI01000012_05909453_05916000 MEMO1 coding upstream 238673 5909453 ~ 5916174 (+)
CI01000012_05856793_05862577 NA coding upstream 292205 5856316 ~ 5862642 (+)
CI01000012_05748899_05754466 ERLEC1 coding upstream 399593 5748899 ~ 5755254 (+)
CI01000012_06182472_06192196 NA coding downstream 5486 6181007 ~ 6192613 (+)
CI01000012_06208439_06217101 BTBD3B, BTBD3 coding downstream 32918 6208439 ~ 6217914 (+)
CI01000012_06334114_06368535 SPTLC3 coding downstream 157828 6333349 ~ 6369091 (+)
CI01000012_06380300_06388370 ISM1 coding downstream 204779 6380300 ~ 6388991 (+)
CI01000012_06441231_06476986 KIF16BB coding downstream 265671 6441192 ~ 6477104 (+)
G72516 NA non-coding upstream 8307 6146197 ~ 6146540 (+)
G72499 NA non-coding upstream 97422 6057224 ~ 6057425 (+)
G72484 NA non-coding upstream 126936 6027694 ~ 6027911 (+)
G71668 NA non-coding upstream 233448 5921193 ~ 5921399 (+)
G71637 NA non-coding upstream 311293 5843064 ~ 5843554 (+)
G72548 NA non-coding downstream 10026 6185547 ~ 6185835 (+)
G72551 NA non-coding downstream 20109 6195630 ~ 6195856 (+)
G72552 NA non-coding downstream 21500 6197021 ~ 6205504 (+)
G72568 NA non-coding downstream 75472 6250993 ~ 6251313 (+)
G72572 NA non-coding downstream 78422 6253943 ~ 6254154 (+)
G71623 NA other upstream 338242 5813517 ~ 5816605 (+)
G71548 NA other upstream 593414 5550493 ~ 5561433 (+)
G71221 NA other upstream 614391 5538525 ~ 5540456 (+)
G71218 NA other upstream 616463 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1630582 7805248 ~ 7811902 (+)
G73578 NA other downstream 2191285 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4046434 10223697 ~ 10236276 (+)
G75533 NA other downstream 4969296 11144817 ~ 11145739 (+)
G76385 NA other downstream 6455234 12630755 ~ 12675666 (+)

Expression


Co-expression Network