CI01000012_06182472_06192196


Basic Information

Item Value
gene id CI01000012_06182472_06192196
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6181007 ~ 6192613 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_06182472_06192196.mRNA
TTATATAAACTACATAATACTACATATAAACAGTATTACAGTACTGTTATAAAGTTAATGCCAAGAGTGAATGCAAGTGATACAGTAGTTACTTTTGTAAAACAGTTCAATAATTAGTATAATAATGTTGAGAAACTTATATTTTAAACACAATATTGCCAGTTACTTTGTCTACTTTTACTCTGTCAATGAAACCATATCCAAAGGCAAATTATCTGTTGTTTCTCAGAGCAACACACGATAGTGGCGTTACTGGAAAAAGCAGTGTTTTTGAATGAATTGTTGTTCAGTTGTTCCTGAATGATTCAGTGCTGCTAAATGAACTGGTGGAATGACTGGCTGACTGACTCACGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGACTGGCCTTGTAAAAATGCTAGTAAACTTTTGCAAGTAGCGATAGATGACATTTACACTAAATGAAAATAGCATATTTTATTAGCGATAGATGCTATTTACACTAAGTGACAAGAGCATTATATTCTGTTTACACTAAGTGACAATAGCAGCATTTTCTTAGCGATATGCTATTTACACTAGGTGAAAATAGCAATAGATTCTATTTACACCATGTAAAAGTATCAGTTCTTTGCAATAAGAGTAAATAGTAATTAGATGCTATCTATGCTTTATATTGGCAGACACTAGTTGCACCTTATTATTTTTGTACATTAACAGGATGCAATAATATCATAGAGAAATGATTATATTTATTAAAATTATTAAATGGACGCTGCCTTATTGGGAGAATAAAAACTCTCCCTACACCTTCCCCTAACCCTACCCAATAAACACTTTTAATATCATTAAACACTCGTTCGCAGTTTATTTTCACTTTAAGAACATTATTTTAATTTTTATTGAAAATAAACGCGGACTCTGCAAAAGGCGGATTTGAACGCCTCGATTGCGTTAAAAGCCACGTTTGCGAGTCTTGAATTCTTAAACGTTGAATTCTGTGCATCTTTTTTAAAACTTGAGTGGCCCAACCATACATTGGTGGATTTTTAGACCTTGTGCACTCCTTGACAGTCTTGTGCACTTACTTCCTGTCGCATACAAGTGCTCTCAAGTGGTTGCCACAGCAAGTGTGGGAATTGGTACAGGCCAATTGTCAACTTGTCTCTTACTGAATAAATCAGTGTTTATGAATGCATTAGTTTAGTGAATGATTTAATGACTCACTTATAAAGTCGCTTGTCGCCACCTACTGCCGTAATGAAAAAAAAAAAACATCATTAATGCAGACTGCATCACTTGCATTCACGCTTACTTGTGTAATATTGCTTATATGCATTATTTTAAATAAAATACTAATGTTGTATACAAATTATGAGTGTTCTTTCAAAGTCACTTTCGATAAAAGCATCTGCTAAATGATTTATAAGACACATATATTCCCGACTACATGTCTCATAAAAGCAGAACGGAGCTGAAAGGAACTGGTTTGTCTTTGACATCTGGGTTGACTGATTTGAACCGCATACTTGGTGAGACAGGGAGTATGCTTATTGTCAAGGGTCAGAGCCAAAGTTTTTCTGTTAGTGAGGGGAGTTTTCGGCACGTAAATCTGGCCTCTCTGGGACCGTCTGGCTGGCAGGCAGGAGCGCGGCTCAATCTGCAAGGACTGCACATGCTCTTCAAACATGTGGAGACTGGCCAAAGGGTCGAAATCGACCCCATTTTGCGTGTGTTGGCCAAAGCACACGTCTTTGAGGAACTCCCTTTTGAGCCCAGCCTGTCTAGACTCATTGTCCGTCTGCCCACCGCCTGGAGATGTGAAATATTGATTAGCTCATTCACCCATATGATCCAATGCTGGCTTCTCCTGTCAGGCTTATTTAAACTCTCACCCGTGAAGGGGCTCCCCAGTGAAGGGCAGTTGAAATCAACAATCAGCAAGGAACCTGAAGGGGGGCTCATATTTCAGGGCAGTAACAGGGAAGAGGGGCATTTGGACATAATCTCTCTGAAAGGGGCTGACGAGCAGAAGAGGAAGAAAACAGGATCAGGATCCATTATGCTTTTACAGAGCAAGATCTAAATCCTTCTCTCATTATGCTATTAGGCTCTCTTGTGTCCCAGTTTGGAGAGAATTCTTCTCCACCCAGACACACTTATTTATTTATTTGCACGGAGAATATAGGTCACACATTTTAAGTACTACTTATAAATTTTTTATGCATTGCAGCTTTTATTCAAACGGGCACCAGCGTTTGCAAATTGTTTTTGCTGCAGAACGACTGTGGCGATATGAAATGTTATAGTTTAACAAAGAATTGCGCTTGTTATGCTGATTTCATGAGCCATTAGCCATAGTGTCATTGTGCTCACGAACATATTGATATCTACAGATGTGCTGAATGTTTAGATTTGAATTTTAATTGCAAAAAGATGCCAAATATCCAATGAGGTTTAAATGTGCATGTCTAGAATTAGTAACTGAGTGAAATACTTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_06182472_06192196.mRNA True 2518 mRNA 0.37 3 6181007 6192613

Neighbor

gene id symbol gene type direction distance location
CI01000012_06156417_06175135 NA coding upstream 5486 6154847 ~ 6175521 (+)
CI01000012_05946986_05984551 SLX4IP coding upstream 195048 5946986 ~ 5985959 (+)
CI01000012_05923216_05928055 SRD5A2B coding upstream 251821 5922385 ~ 5929186 (+)
CI01000012_05909453_05916000 MEMO1 coding upstream 264833 5909453 ~ 5916174 (+)
CI01000012_05856793_05862577 NA coding upstream 318365 5856316 ~ 5862642 (+)
CI01000012_06208439_06217101 BTBD3B, BTBD3 coding downstream 15826 6208439 ~ 6217914 (+)
CI01000012_06334114_06368535 SPTLC3 coding downstream 140736 6333349 ~ 6369091 (+)
CI01000012_06380300_06388370 ISM1 coding downstream 187687 6380300 ~ 6388991 (+)
CI01000012_06441231_06476986 KIF16BB coding downstream 248579 6441192 ~ 6477104 (+)
CI01000012_06620470_06637571 NA coding downstream 427447 6620060 ~ 6637689 (+)
G72516 NA non-coding upstream 34467 6146197 ~ 6146540 (+)
G72499 NA non-coding upstream 123582 6057224 ~ 6057425 (+)
G72484 NA non-coding upstream 153096 6027694 ~ 6027911 (+)
G71668 NA non-coding upstream 259608 5921193 ~ 5921399 (+)
G71637 NA non-coding upstream 337453 5843064 ~ 5843554 (+)
G72551 NA non-coding downstream 3017 6195630 ~ 6195856 (+)
G72552 NA non-coding downstream 4408 6197021 ~ 6205504 (+)
G72568 NA non-coding downstream 58380 6250993 ~ 6251313 (+)
G72572 NA non-coding downstream 61330 6253943 ~ 6254154 (+)
G72730 NA non-coding downstream 203784 6396397 ~ 6396703 (+)
G71623 NA other upstream 364402 5813517 ~ 5816605 (+)
G71548 NA other upstream 619574 5550493 ~ 5561433 (+)
G71221 NA other upstream 640551 5538525 ~ 5540456 (+)
G71218 NA other upstream 642623 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1613490 7805248 ~ 7811902 (+)
G73578 NA other downstream 2174193 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4029342 10223697 ~ 10236276 (+)
G75533 NA other downstream 4952204 11144817 ~ 11145739 (+)
G76385 NA other downstream 6438142 12630755 ~ 12675666 (+)

Expression


Co-expression Network