CI01000012_06993214_06995298 (FLRT3)


Basic Information

Item Value
gene id CI01000012_06993214_06995298
gene name FLRT3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6993053 ~ 6995777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_06993214_06995298.mRNA
TTATATATAGAAATGATTTCAATCAAGATAAATACCCCAGGCATGTTTCGCTACCATGGTTTTTTTCATTTGTTCATGTCATTGGAAATGTTAATAGATTCTTTTCATTAATTCAACAGCAGAAATATAGTATTATTTTTCTTAAAATTAAATAATTTACTATGAGAGAGGCGCTCCAGGCGCTGTACATAAAACAGCAATTAGAGCAGGACATTGCCTTTTCTTCAAACTGCATGAATTTGACTTTTTCCCTTCTTTTTCCTCCAAGGGCAACAATCGCAAAAAGGACATTAGCGATGGCAAGCAATTACAAGTCCTTCTTCGTCTTCTTCATCAGAGCCGGGCTTTTGCTTGGCCTGGCCAATCCGTTGGTGACCTCAGCCTCCTGTCCCTCACAGTGCCGTTGCGATGGGACTTTCATATACTGCAATGACCGGGATTTGACTTCCATCCCTTCAGGCATCCCAGAGGATGCTACAGTACTTTTTCTCCAGAACAACCGCATCAAAAGTGCAGGGATCCCTACGGATCTACGACGGCTAAACAATGTCGAAAAGATCTACCTGTACTGCAACAATCTTGATGAGTTCCCCACCAACCTGCCGCTGAATGTCAAGGAACTTCATTTGCAGGAGAACAATATCCGGACTATCACCCATGCCTCCCTGGCACAGATTCCCTTTATTGAGGAATTACACCTTGATGACAATTCCGTGTCAGCAGTCAGCATTGAAGAGGGTGCCTTCCGGGACAGCAACCATTTGAGGCTGCTCTTCCTGTCACGGAACCACCTCAGCACCATACCTTCCGGTCTGCCAATGACTATTGAGGAGCTTCGCTTCGACGACAACCGCATCTCGTCCATCTCAGAGGCATCCCTGCAGGATCTTATAAACCTGAAGCGACTGGTTCTGGATGGCAATCTTCTGAACAACAGGGGCATTGGGGAGATGGCCTTGGTGAACTTAGTCAATCTGACCGAGCTCTCCTTGGTACGAAACTCCCTGACATCCCCACCCTCCAACCTGCCGGGCACAAGCCTGGAGAAGCTAAATCTTCAAGACAACCACATCAATCACGTGCCAGCAGGTGCCTTTGCTTTTCTGCGACAGCTGTACCGCTTGGATCTGTCAGGCAACAACTTGAGCAGTCTGCCCATGGGGGTATTCGACGACCTGGATAACCTTACGCAGCTGCTCTTGCGCAACAACCCCTGGTACTGCAACTGCAGGATGAAGTGGGTACGTGACTGGCTGCGCACTCTTCCATCTAAGGTCAATGTGCGTGGCTTCATGTGCCAGGGTCCCGATAAGGTCAAAGGGATGGCCATCAAGGACCTATCCACAGAGCTGTTTGGCTGCTCGGACACAGAGATTCCACCCACATTTGAGACCAGCACAGTCTCAAATACTTTGCCACCCTCTCGGCCCCAGTGGCCCTCATACGTAACTAAAAGACCTGTGGTTAAGGGTCCAGACCTTGGAAGAAACTATCGTAGCACGACGCCGTCCAGTCGTAAGATCATTACAATAAGCGTTAAATCCAGTAGTGCTGAGACGGTGCACATATCTTGGAGAGTATCTCAGCCCATGACGGCCCTGAGGCTCAGTTGGCTAAAGCTGGGCCACAGTCCTGCATTCGGATCCATAACTGAGACCATCGTCCAAGGGGAGAGAACAGAGTACCTGCTCACTGCTTTGGAACCCGAATCCTCTTATCGGATATGCATGGTTCCCATGGAAACTAGTAACATTTACCTGTCAGACGAGACACCTGTTTGCATAGAGACAGAAACTGGTTCCCTGAAAGCATACAATCCCACCACAACCTTGAACAGAGAGCAGGAGAAAGAGCCTTATAAAAATTCCAATCTGCCTTTAGCTGCTATCATCGGAGGAGCAGTGGCCCTTTTGGCCATCATCATGCTGGCCCTGGTGTGCTGGTACATCCACAGGAATGGTTCCTTATTTTCCAGGAACTGCACATACAACAAAGGGCGTAGGCGGAAGGACGATTACGCTGAAGCTGGAACAAAGAAGGACAACTCCATCTTGGAGATTAGAGAGACCTCTTTTCAAATGATTCCCATAAATCACATGCCCGTTTCAAAGGAGGAGTTTGTGATACACACAATTTTTCCTCCCAATGGCTTAAGTCTTTACAAGAGTCCACACAGCGAAAACAGCATCAACAACAGAAGCTACAGAGACAGTGGAATACCAGATTCAGACTACTCTCATTCATGATAGTGTGCGCGGATTACAAAGACATTTTATTGCTAATGAGTGACTTGGAGGCTGCTTGGTCTTTTGCAAAACACTGGATTGAAAAGACTGAGAAAGCATCGATATGTACATTTGCCATATAATTTATATTTAAGGACGATTTATTAAAAGGAAAAAGGTTCCGATTGCAGGCCATCACTGAACCGTCGGTGTATGCTGCCACAAACTGCAATTCTATATTTTAGATATTTGTAGTCATTTGTACTGTACTTCCTTTACTTATGGTTTTAGACCAATTAAAAAAAACTTTGTGCTCTACTGAGATATGATGACTTGTCAACTGTGAAAGTGGGTTTTCATTGCTGTGTTGAACAATCAGATATTAGAAAACCATGTAGTATAAGCACAGGTCAAAACTATCGCTATGTTGCTGTCAGTGAAAAAAAAAATACAACAAAAAACAAGGCTGTGGGAATATAGGGCATAGTTGATCAAAGGAA

Function

symbol description
flrt3 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in several structures, including mesoderm; midbrain hindbrain boundary neural keel; nervous system; optic primordium; and optic vesicle. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 21 with or without anosmia. Orthologous to human FLRT3 (fibronectin leucine rich transmembrane protein 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_06993214_06995298.mRNA True 2725 mRNA 0.46 1 6993053 6995777

Neighbor

gene id symbol gene type direction distance location
CI01000012_06990634_06991686 NA coding upstream 1205 6990634 ~ 6991848 (+)
CI01000012_06938165_06970627 NA coding upstream 22152 6937590 ~ 6970901 (+)
CI01000012_06862144_06865773 NA coding upstream 126975 6861542 ~ 6866078 (+)
CI01000012_06826817_06842273 NA coding upstream 150524 6825923 ~ 6842529 (+)
CI01000012_06651665_06682236 NA coding upstream 310353 6651588 ~ 6682700 (+)
CI01000012_07008711_07010256 NA coding downstream 11525 7007302 ~ 7011132 (+)
CI01000012_07038865_07063702 NA coding downstream 42977 7038754 ~ 7064005 (+)
CI01000012_07089179_07092023 NA coding downstream 92706 7088483 ~ 7092030 (+)
CI01000012_07104155_07105373 NA coding downstream 108285 7104062 ~ 7105580 (+)
CI01000012_07108281_07109521 NA coding downstream 112504 7108281 ~ 7109922 (+)
CI01000012_06441231_06476986 KIF16BB non-coding upstream 396536 6441192 ~ 6477104 (+)
G72760 NA non-coding upstream 431442 6557200 ~ 6561611 (+)
G72713 NA non-coding upstream 594413 6397486 ~ 6398640 (+)
G72731 NA non-coding upstream 596043 6396744 ~ 6397010 (+)
G72757 NA non-coding downstream 78889 7074666 ~ 7087621 (+)
G73150 NA non-coding downstream 235409 7231186 ~ 7231443 (+)
G73223 NA non-coding downstream 264049 7259826 ~ 7260038 (+)
G73224 NA non-coding downstream 265083 7260860 ~ 7261065 (+)
G73253 NA non-coding downstream 342993 7338770 ~ 7338975 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1068748 5922385 ~ 5929186 (+)
G71623 NA other upstream 1176448 5813517 ~ 5816605 (+)
G71548 NA other upstream 1431620 5550493 ~ 5561433 (+)
G71221 NA other upstream 1452597 5538525 ~ 5540456 (+)
G71218 NA other upstream 1454669 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 810326 7805248 ~ 7811902 (+)
G73578 NA other downstream 1371029 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 3226178 10223697 ~ 10236276 (+)
G75533 NA other downstream 4149040 11144817 ~ 11145739 (+)
G76385 NA other downstream 5634978 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006766 flrt3 coding NC_007124.7 CM002897.2 33811842 ~ 33822550 (-)
bowfin (Amia calva) AMCG00001622 flrt3,LOC107654987,LOC107705403,LOC107600562 coding CM030143.1 CM030143.1 9316419 ~ 9322940 (-)