CI01000012_07312430_07315865 (BTBD6A)


Basic Information

Item Value
gene id CI01000012_07312430_07315865
gene name BTBD6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7311672 ~ 7315917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07312430_07315865.mRNA
ATATATAAAGAATTAAAAATCATCATCACTGAACAGTCCACAGAGATCCTCACAGGCTCCATTTACGCAGGGTTGCCAGACCCCACAAGAAAAACAAGCAATCTGCTTTAGACGTATATTTTCAATAATGTCCTTTAAGAAAAAAAAAAATCATTATTTCACATATATATAAGTATGTATTCACATATACATACTGCAAATAATCCCCAAAGCAACACGTGAATAACCATGTGTAAATATCCTAGACAAGAGCTGCTTATAATAATGGGACATGGCAACACAGAATTTACAGGAGGGATAAGAGAGACAACCCTCCACTGCTGACGTCAGACGAGAGAGAGAGAGCTCAAAATAAACTCAAATTTAATCATTCCGTGTGGCCACAGCTGAGGAAAGGTCTGCTTGGCCGTTATTTAAGACTACAGACGCAATTTTTTTTCAATACTTGTGTAATTCCTAAGTGATTTTAAACGGATTTGGATTGGATTTTCGGTATAGGATGGGAGAGTAACGTTATGTGATTAGGGAAAAGAGGATGGCATATCTATGAAATAATCCTTGAATTCCCAAATATTTACGTGCCCATTTAAGGACAGTGGAGCGGTTTTTGTTTCCAAGGAAACTACGCAATATTACTTGGGAATATCACGGACCACGGTTGTAGCTGATAGTTTTTTTTTAATACAAAACAAAAACTTTTCTTTTTTGTTCTGATGCCCGCTGCGCCGGAATGCAGGCTGTCCCATCATGGCCGGATCATGAAATGCGTGACTTTTTTACTCTTGCTCCCCGAAACGTTAAAGAAGTTGAAGCGGGCAAGCAAGCACCCCGGCAGGCTGTCTGTGTGCTATAACATCTTAACTCTCTCCCTGAAGAAAAGGATGGCAGCGGAACTGTACCCCGTGAACGATCACGCCACAGTGCAGAAGAACGGGACCGTGATGCTGAGTCTGTCAGAGAAGAAGAGCGCAGAGCCGGTTGCGCAGACCACCGCGTCCATCGCCACCACACCAAACACAGAGCAAAACATCAACAACAACAACGTGGAGATTCCCAGCTGGCACTCCGCGCACCCGACGTTACGAGAAAGGCAAGACATTAAATCAAGTGATATAATAAATGCACTAATGTTCAATAATGAACACATGGCAGATGTTCATTTCATTGTTGGTCCACCCGGCGAATCGGAAAGGGTCCCGGCACACAAGTATGTGCTGGCAGTGGGGAGCTCCGTTTTCTGTGCCATGTTTTATGGGGATCTCGCGGAAGGGGACTCTGATATCCATATTCCAGATGTGGAACCCGCTGCGTTTCTCATCCTGCTCAAATACATGTACAGTGATGAAATAGAGCTGTCGGCCGACACAGTTCTAGCTACGCTCTACGCTGCCAAAAAATACCTGGTGTCTGCTCTGGCTCGCGCATGTGTGGGTTTCCTCGAGACGAGCCTGGCGGCCCGAAATGCGTGCGTGCTGCTATCTCAGAGTCGTCTGTTTGAGGAGCCAGAGCTCACTCAGAGATGCTGGGAAGTGATCGACGCCCAGGCAGAACTTGCGCTGCGCTCCGAAGGTTTCTCTGAGATTGACCTGCCCACACTGGAAAGCATTTTACACAGAGAGACGCTGAACGTGAAGGAGGCGGTGGTGTTCCAGGCTGTCCTGGGATGGGCCGATGCAGAGTGTCGGAGACAAGGCTTAAGCCTCACGTCACAGAACCAGCGCTCTGTGCTGGGAAAGGCATTGCACCTTGTGCGCCTGCCCTCCATGACACTGCAGGAATTTGCAGACGGAGCGGCGCAGTCGAACATTTTAACCCTTGAGGAAACACACAACATCTTTCTCTGGTACACAGCTGCTACGAAACCTTCACTGGGATTCCCGGTTGCATCCAGAAAGGGGCTGGCGCCGCAACGCTGTCACCGGTTCCAGTCATCCGCCTACCGAAGCAACCAGTGGCGCTACCGCGGACGCTGTGACAGCATCCAGTTCGCCGTGGACAAGCGAGTGTTTATCGCCGGACTTGGTCTGTACGGCTCCAGTGGAGGGAAGGCGGAATATAGCGTCAGAATTGAACTAAAGAGACAGGGAGTGCTTCTGGCACAAAACTTGACCAAATTTGTGTCGGATGGTTCTAGCTCAACGTTCCCTGTGTGGTTCGAGCACCCACTACAGGTGGAGCAGGATGCGTTCTACACGGTTAGCGCCGTTCTTGATGGGAGCGAGCTAAGTTATTTTGGACAGGAAGGAATGACAGAAGTCCAGTGTGGGAAAGTCACCTTCCAGTTTCAGTGTTCCTCTGATAGTACTAATGGGACAGGGGTGCAGGGGGGACAGATTCCGGAGCTGATATTTTATGCATGAGTACTCAGACTGATCCATTAATGAAAAGACAGCAGGGGGATTTTTTTCTCAA

Function

symbol description
btbd6a Acts upstream of or within regulation of neurogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in nervous system; neuroblasts; posterior neural keel; posterior neural plate; and spinal cord neural tube. Orthologous to human BTBD6 (BTB domain containing 6).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07312430_07315865.mRNA True 2412 mRNA 0.48 4 7311672 7315917

Neighbor

gene id symbol gene type direction distance location
CI01000012_07136101_07161117 RRBP1A, RRBP1 coding upstream 150124 7136017 ~ 7161548 (+)
CI01000012_07120539_07126148 SNX5 coding upstream 185400 7120539 ~ 7126272 (+)
CI01000012_07111569_07113225 NA coding upstream 198440 7111569 ~ 7113232 (+)
CI01000012_07108281_07109521 NA coding upstream 201750 7108281 ~ 7109922 (+)
CI01000012_07104155_07105373 NA coding upstream 206092 7104062 ~ 7105580 (+)
CI01000012_07348648_07352865 NA coding downstream 32731 7348648 ~ 7353209 (+)
CI01000012_07359292_07362314 NA coding downstream 42798 7358715 ~ 7362378 (+)
CI01000012_07401962_07405598 NUSAP1 coding downstream 86045 7401962 ~ 7405598 (+)
CI01000012_07409605_07427042 RTF1 coding downstream 93075 7408992 ~ 7427309 (+)
CI01000012_07429147_07434790 GOLGA5 coding downstream 113230 7429147 ~ 7434846 (+)
G73224 NA non-coding upstream 50607 7260860 ~ 7261065 (+)
G73223 NA non-coding upstream 51634 7259826 ~ 7260038 (+)
G73150 NA non-coding upstream 80229 7231186 ~ 7231443 (+)
G72757 NA non-coding upstream 224051 7074666 ~ 7087621 (+)
CI01000012_06826817_06842273 NA non-coding upstream 469248 6825923 ~ 6842529 (+)
G73253 NA non-coding downstream 22853 7338770 ~ 7338975 (+)
G73254 NA non-coding downstream 28678 7344595 ~ 7344915 (+)
G73181 NA non-coding downstream 29589 7345506 ~ 7345781 (+)
G73255 NA non-coding downstream 31733 7347650 ~ 7347902 (+)
G73257 NA non-coding downstream 56155 7372072 ~ 7372408 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1387367 5922385 ~ 5929186 (+)
G71623 NA other upstream 1495067 5813517 ~ 5816605 (+)
G71548 NA other upstream 1750239 5550493 ~ 5561433 (+)
G71221 NA other upstream 1771216 5538525 ~ 5540456 (+)
G71218 NA other upstream 1773288 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 490186 7805248 ~ 7811902 (+)
G73578 NA other downstream 1050889 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2906038 10223697 ~ 10236276 (+)
G75533 NA other downstream 3828900 11144817 ~ 11145739 (+)
G76385 NA other downstream 5314838 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006756 btbd6a coding NC_007124.7 CM002897.2 33394116 ~ 33398735 (-)