CI01000012_07379927_07381734 (CCDC28B)


Basic Information

Item Value
gene id CI01000012_07379927_07381734
gene name CCDC28B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7378534 ~ 7381734 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07379927_07381734.mRNA
AAAGTGCCACTGCCCTCATGGAGGACAAGAGGAAGAAAAGGAGTCCCAAAGTGTCCCTGCCCCAGCCCCCTCCTCCACCAATCAACCCTCGAAAGCTCTCCGTTCTCCCGGCGAGTAAGAGCGCCACATTCTCGTTGGGTCTGCCCCAGCCCCCCTCCCCCAAACCCAGGGGAAAGTACAAGAGATCGGTGGGGGCAATGGGTCCATCTAAAGAAGTTCTTGCCGTTCCTGTGGTTCCCCCTAAAAACACAAGGCCACACAGAGAGAAGCCCAGAGCTCCTCAGCCTGCCGGACCCAGTCGTGTATCCCAGTCCTCCTCGCCGCTCCAGCACTCATTCCTCACTGACGTCTCTGATGTGAGAGAGATGGAGGGAGGACTGCTCAACCTGCTCAACGACTTTCACTCTGGAAAACTACAGGCTTTTGGTAAGGTGTGCTCCTTTGAGCAACTAGAGCATGTGAGGGAGATGCAGGAACGTCTGGCTCGGCTACATTTCAGTCTGGACAGTCATGTGGAGGAGCTGTCTGAAGACCAGAGAAAAAACGCTTCGGACCGCAATCTAGAACACCTGCTTTCTAATCCTGTGAAGGGCTGGACAGTTACTATTGATAGTATTTCCCTTCTAGCTGTCAGCTCAGTGGTATGTGGTAGAGAGCCCAGAGTGTGACAGAGTATGTGTGAACTGTTTCATTATCGGTGGTTCACTCAGTATAACAGAGTGTATATGACTGAATATTATAGTTCAGGTTACTTTTTACCTCACTTTTTTGTCATTAAGCTTGTTTTCAGACTATTAAAGGGTTAGTTCACTCAAAAATTGTAATCAGTTACTCACCCTCATGTCGTTCAAACCCGTAAGGCTTACGTTCATCTTCGAAACACAAATGAAGATATTTTAATGAAATCTGAGAGATTTCTGTCCCTCCTTTGACAGTCTACACAAGTGACATTTTGTCGCTTCAAAAATTTCATAAAGAGATCATAAAACTAACCCATATGAATTGAGCAGTTTAGTCCAATTTTTTTGAAGAGACTCAATTGCTTTCTATGATGAACAGATTTAATTTAGTTTTTTAATCATATATAAACATTAATCAGCAAACTTAAACAGAAGCTCAGCCGAACCTGCTTGACGCATGAGAACAAACCTCTTCCGGAAGCTCAAACATGCTGCGTAACACACGAGAATGAATCTCATTGGTCCTTGCACACGTTAAGCAAACATGCTTGAATTTCCATTTACCAAAACTGATGTGTGAGTTGATAAATGTTTATATGTGAATAAAAACCTAAATTCAATTCTGTTCTTATGATCTTATAAATCTTATAAAGCAATCGTGTCTCTTCGGAAAATTTATACTAAACGCTCGATTCTTATGGATTAGTTTTACAATCTCTTCATGAACTTTTTGAAGTGTCAAAGTGTCAGTTGCGTAGCTGTCAATGGAGGGATGGAAATCTCTCAGATTTCATCAAAAAGATCCTCATTAGTGTTTCAATGATATACGAAAGTCTTACGGGTTTGGAACGACATGAAGGTGAGTAAATGATGACAAAAAATGTTTTGGGTGAATTAACCCTTTAAGACTTAATATTTTCATTAAGCACATTCTCCATAATGCAATGTTTTACTTATAAATTTGTCTATAATTCTCATTATTGATTCTTATTACTGTACTACAGTCTTTTTTAATGTATTATTTTTTAAATCAGCAATATTTAAAGGCAGCACAACAAATACTACCAAGATGTATTTTACTATTTAAATAATACATATATATTAATTACAATGTTAAATTAATACAATAGTTATTTATTCATGTATCTATTATTGTGTTAATGAAAATTAGGAGGCAAAAAAATATTAATAATATTGATAATAATGCCACAGAGCAAAAAATGTAATGGTCCTAAAAATATTTATTTTTATGGCATATATGATTTTTGATTTTAAGGTAAAATATGACTTGGAAATGTTTGTGAGATTCACCCATTTATAATCAATTTGATGTCCAATAATTCACATAATCTTGAAGATGTTTATAACAAGCAAAAATAAA

Function

symbol description
ccdc28b Acts upstream of or within cilium assembly. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human CCDC28B (coiled-coil domain containing 28B).

GO:

id name namespace
GO:0005813 centrosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07379927_07381734.mRNA True 2061 mRNA 0.38 4 7378534 7381734

Neighbor

gene id symbol gene type direction distance location
CI01000012_07374223_07375676 IQCC coding downstream 2858 7374047 ~ 7375676 (-)
CI01000012_07368295_07372257 NA coding downstream 6277 7368295 ~ 7372257 (-)
CI01000012_07366635_07367888 NA coding downstream 10646 7366480 ~ 7367888 (-)
CI01000012_07356934_07358497 NA coding downstream 19922 7356863 ~ 7358612 (-)
CI01000012_07322669_07329009 NA coding downstream 49022 7322633 ~ 7329512 (-)
CI01000012_07388341_07401600 NA coding upstream 6607 7388341 ~ 7401756 (-)
CI01000012_07406125_07408361 NDUFAF1 coding upstream 24381 7406115 ~ 7408361 (-)
CI01000012_07504355_07506926 NA coding upstream 121726 7503460 ~ 7506926 (-)
CI01000012_07537907_07544112 RDH11, RDH12 coding upstream 155707 7537441 ~ 7544112 (-)
CI01000012_07556881_07563284 ARG2 coding upstream 174372 7556106 ~ 7563393 (-)
G74113 NA non-coding downstream 32750 7345481 ~ 7345784 (-)
G74130 NA non-coding downstream 40349 7334138 ~ 7338185 (-)
CI01000012_07316139_07320354 NA non-coding downstream 62299 7314756 ~ 7321193 (-)
G74137 NA non-coding downstream 110259 7266989 ~ 7268275 (-)
G74296 NA non-coding downstream 114509 7263770 ~ 7264025 (-)
G74363 NA non-coding upstream 181988 7563722 ~ 7563999 (-)
G74376 NA non-coding upstream 216179 7597913 ~ 7598119 (-)
G74378 NA non-coding upstream 219407 7601141 ~ 7601382 (-)
G74381 NA non-coding upstream 311642 7693376 ~ 7694697 (-)
G74477 NA non-coding upstream 451628 7833362 ~ 7836466 (-)
G72629 NA other downstream 1231040 6147011 ~ 6147494 (-)
G72294 NA other downstream 1912677 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 1961754 5413369 ~ 5416780 (-)
G72204 NA other downstream 2076328 5293773 ~ 5302206 (-)
G74648 NA other upstream 882595 8264329 ~ 8265654 (-)
G74701 NA other upstream 985285 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 1686172 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 1689637 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 1701002 9081877 ~ 9083489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006121 ccdc28b coding NC_007124.7 CM002897.2 33282095 ~ 33293654 (+)