CI01000012_07409605_07427042 (RTF1)


Basic Information

Item Value
gene id CI01000012_07409605_07427042
gene name RTF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7408992 ~ 7427309 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07409605_07427042.mRNA
ATATAAAAAGCCCCAGAATATCTTACGGCAATCTCTTTTTTCCTTTTTTTGCAAACACTTACATGTTCACTTGACTGTAATGAGCAATGGGGATGAATCTTAGTTGACTTTATACGACATTCAGAAGTCATTACATGAAAGAGCCACTGCGTGATTGAATGTTAGTAACAGTTGCATATAACAGCTATGCTACAAACAATCATATTTAAAAATAATGAAAAATAAATAAATAAACGTAAAATATGGCTCGAAAGCAATTAATTTTTACTACTCATTTGTAACGCTCAAATGTGCCATTGCCGTCCGTCCTATAATCTGTCCTTACCTGAAACAAGCAAACGTGCTTATGGTCCTACCGAAAACAAATATCTCTCGCAGTTGATTCCCGCCCACATCACATTTCGTGGTTAACAAATATTATTATAATTTTCGCTAAGTGTATGCATACATACTATGTACAATTAATAGATACAGCACATTTGCGAGCCTGTGTATGTCGTCGCTGTTTATTGGAGTGACGTGTGCGCATGCGTAGTGCAGCTCTAGCGCCTTTGTGTGGAGGAGTGCGGCGCTGCTGTTTAAACACACACACAGGGGAGCCAGGCAGCTAACCATGGTGAATGTAAAGAAACGGAAAGGTCGGGTCGTGATTGACTCTGACTCGGAGGATAGTGCAAGCGATGATAATTTGGATCAGCACGCGGGTACTTCGGCTGTACAAAAGTGGCCGCCTGTAGAAATACGACGAGAGACTAGAGAGGACAGACTCTTCTCAAACACATCCCGAAAGCAGTTTTTGATTGGACAGTTGAAAGTCACATGCTACATGAAAATAAGAATATGGAGACACATTCAAGAGCTGCTGTCTCTTGCCAAGAGAAAGCGTGTGGATTCTGATGAACAGGAAGAGCCTGTTAGTAAACCTGCCGCCTCCACGGACTCAGAGACATCAGACAGCGATGATGAGTGGACTGTTGGAGGCACTAAAACCAAAAAGAAGGGAAAACCTAGTAAAGGGCCCGAAAAGAAGAACACAGTCAAGAAAAGAAAGGGCAAGGCGGCTTCATCCGGCAGCTCAAATGGAGACAGTTCAGCAGAGAGTTCGGCTCCAGAGGAGGGTGAGGTGTCAGACTCCGACAGTAACAGCTCATCATCCAGCTCAGATTCTGACTCGTCATCAGAAGATGAGGTTTTCCGGGATGGTTATGGAGACGACCTAATGGGGGATGAGGAGGACAGGGCGCGTTTGGAGCAGATGACGGAAAAAGAGAGAGAACAGGAGCTGTTTAACCGTATAGAGAAGAGAGAAGTCCTCAAGAGGAGGAACACAAATAGGGTTTTACACTCACGTTTCCTCTCTCCATTCATGCAGGTTATGTCACATAACAAAGAGAGACGGATCAAGAGAGATGAGAAGCTGGACAAGAAGTCACAGGCCATGGAAGAACTGAAAGCAGAAAGAGAGAAGAGGAAAAACAGAACTGCTGAGCTCCTTGCCAAAAGGCAGCCGCTGAAGACAAGTGAGGTCTACTCGGATGATGAAGAGGAGGAGGAAGATGATGATGACAAGTCTTCAGTAAAGAGTGACCGCAGCTCAAGGTCTTCATCTTTTGATGAAGAGGAGGAGAAAGAGGAGGCTCCGCCCAAGTCCCAGCCAGTGTCATTACCAGACGAGCTGAATCGGATCCGGCTGTCCCGGCACAAACTGGAGCGCTGGTGTCACATGCCGTTCTTTGCTAAAACTGTTACTGGTTGTTTTGTTCGAATTGGCATTGGAAACAGCAGCAGCAAGCCTGTTTATCGGGTGGCTGAAATCATTGATGTTGTGGAGACGGCTAAAGTTTATCAGCTGGGGTCCACACGAACAAATAAAGGCCTTCAGCTCCGACATGGAAATGACATGCGCGTCTTCAGACTCGAGTTTGTGTCCAATCAGGAGTTCACTGAAAGCGAATTCATGAAATGGAGAGAGGCGATGATGTCAGCAGGAATGCAGCTTCCTACTCTAGATGAGATCTCCAAAAAAGAGCAGTCCATCAAGGAGGCGGTCAACTACAAATTTAATGACAAAGACATTGAGGATATTGTCAAAGAGAAGGACAGATTCCGAAAGGCACCACCAAACTACGCCATGAAGAAAACGCAACTTCTCAAAGAGAAGGTTGTAATGATTAGATATACTTCAAATAGATATAAGTGCATACTTGTTCTCATGCTAATCATGCATAACTTGTGTGTACAGGCCATGGCTGAGGAGAGTGGGGATGGAGAGAAGGCGAAAGTACTGCAAGATCAGTTGAATGAGCTGGAGGAGAGAGCAGAAGCACTTGACCGACAGAGAACCAAAAATATCTCTGCCATCAGCTATATCAACCAGAGGAATCGGAGTTGGAATATTGTGGAGTCTGAGAAGGCATTGGTGGCAGAGGGTCAGAACGCAAAGAACCAGCAAATGGATCCATTCACCAGACGGCAGTGTAAACCGACTATGGTGTCCAATGGCCAGGCTGGCCAGAAAGACAAAGACCTTACCAAGCCAAACAGTGACCTCTCAGAGGACCTTTTCAAAGTTCATGATTTTGATGTCAAAATTGACCTACAGGTTCCTAATGCTGACCCTCACAGAATCGACCCTTTTATATCCAAGCTTGTGAATGACTATCTCAAAGGACACTATTAAAAAAAGACAACACAAATCTTGGGGTTTTTTGAAAGTTATTTTTAGTTGTCAATAATGTCATTGGGTCTGCCTCGCTCCCTTGTTCCTCTTGAAAACGCTCTGAATTTTTGAAAGCTTTTCTTCCCCCCCCCCAACCCATGTGTAATGGGTTGTTAGGACAGCCCTTCTTAACTCCGCTTTCTGAGGGGTCGACCAATCAGGGGGAGTCTGACAATGACATCACACTCCCTAAAGATAAACGTTTGTTTCATGTAAGACAATGATCAA

Function

symbol description
rtf1 Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Acts upstream of or within several processes, including neural crest cell development; post-anal tail morphogenesis; and somitogenesis. Located in nucleus. Orthologous to human RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component).

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG:

id description
K15178 RTF1; RNA polymerase-associated protein RTF1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07409605_07427042.mRNA True 2947 mRNA 0.45 17 7408992 7427309

Neighbor

gene id symbol gene type direction distance location
CI01000012_07401962_07405598 NUSAP1 coding upstream 3394 7401962 ~ 7405598 (+)
CI01000012_07359292_07362314 NA coding upstream 46614 7358715 ~ 7362378 (+)
CI01000012_07348648_07352865 NA coding upstream 55783 7348648 ~ 7353209 (+)
CI01000012_07312430_07315865 BTBD6A coding upstream 93075 7311672 ~ 7315917 (+)
CI01000012_07136101_07161117 RRBP1A, RRBP1 coding upstream 247444 7136017 ~ 7161548 (+)
CI01000012_07429147_07434790 GOLGA5 coding downstream 1838 7429147 ~ 7434846 (+)
CI01000012_07441851_07459661 TRIP11 coding downstream 14542 7441851 ~ 7459786 (+)
CI01000012_07464278_07478699 FBLN5 coding downstream 36969 7464278 ~ 7478992 (+)
CI01000012_07480048_07492395 NA coding downstream 52739 7480048 ~ 7492766 (+)
CI01000012_07497278_07501713 PLEK2 coding downstream 69921 7497230 ~ 7502298 (+)
G73162 NA non-coding upstream 8715 7395368 ~ 7400277 (+)
G73258 NA non-coding upstream 36178 7372589 ~ 7372814 (+)
G73257 NA non-coding upstream 36584 7372072 ~ 7372408 (+)
G73255 NA non-coding upstream 61090 7347650 ~ 7347902 (+)
G73181 NA non-coding upstream 63211 7345506 ~ 7345781 (+)
G73175 NA non-coding downstream 280366 7707675 ~ 7715446 (+)
G73321 NA non-coding downstream 306987 7734296 ~ 7734698 (+)
G73346 NA non-coding downstream 374612 7801921 ~ 7802123 (+)
G73359 NA non-coding downstream 428034 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 442089 7869398 ~ 7869602 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1484687 5922385 ~ 5929186 (+)
G71623 NA other upstream 1592387 5813517 ~ 5816605 (+)
G71548 NA other upstream 1847559 5550493 ~ 5561433 (+)
G71221 NA other upstream 1868536 5538525 ~ 5540456 (+)
G71218 NA other upstream 1870608 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 378794 7805248 ~ 7811902 (+)
G73578 NA other downstream 939497 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2794646 10223697 ~ 10236276 (+)
G75533 NA other downstream 3717508 11144817 ~ 11145739 (+)
G76385 NA other downstream 5203446 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006750 rtf1 coding NC_007124.7 CM002897.2 33229446 ~ 33246154 (-)