LOC103046888 (LOC103046888,LOC108424009)


Basic Information

Item Value
gene id LOC103046888
gene name LOC103046888,LOC108424009
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7821981 ~ 7837425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230633.3
GAAGTGAGCGCGCCGTTAAGCAGGAGCGCTGACAGACGGAGCCGTTCGCGCGCTCGAGCGAGGAGGAATCTCCggttgtttataaaaatgcgGTCTAAGGGAGTGCTCCTGTTCCTGCTGCTGGGCGCGTTCACGGCTTACTACGTTTATATGCCCATTCCGGACAACATTGAGGAGAGATGGAAGCTCATGTTCACGGACTGCTTCTTCAGAAGTTTGAGCcacctgGCAGACTTTAGTGAGCTGTTGGGGCTGAAGGACTACATGGGGGTGATGATGTTCATCACGTTTGCGGAACAAGTGGTGCCTGTGTCTGATGAGCGGGTGCAGGTGTCAGAAGAGCTGTTTGATGgtgtggaggtggtggtgtATCAGCCCAGGCAGGAGAAAGGAGCTGGAGAGGCGAGGAGGGCCATCATCTATCTGCACGGGGGAGGATGGTGCCTGGGCAGCTCCAGAATGGGACCTTATGATCTTATGGCCAGACAGATGGTTACAGAGCTCAATGCGGTTGTTGTTTCTGTAGAGTACCGCCTGGCCCCAGCTCATCGATTTCCTGCCCCGTTTGAGGACGTGTACCGTGTCGTCAAGTACTTGTTCCAGCCGGACGTCCTGGAAAGGTACAAAGTGGACCGAGAGCGGGTGGCCGTGTCTGGGGACAGTGCAGGAGGAAACCTGGCGGCTGCAGTGACCCAGCAGTTGCAGTTGGAACCAGAGAACTCTATAAAGCTGAAGGTGCAGGCCTTGCTCTACCCAGTCCTGCAGGCCGTGGACCTCTACACGCCATCCTACCAGCAGAACCAGAACATGCCCATCCTGCCGCGCACGCTCATGGTGCGCTTCTGGAGCGAGTACTTCTCCAGTGATAAGTCTCTCTTCAGGGCCATGATGGCCAACGACCACAACGGCCCCGAATCTGCCGCAATGCTCAAGTTTGTTAACTGGAGCGCTTTCCTGCCCGAGTCGTATCGCCGGGCGTACAATTACAGCGCGCCTCCTGTAGCGCAGACTGAAACAGACCAGCACTCCAACGAGCCAGCTCGCTCCCTCGTAGACCCGCGGGCCTCACCCCTGTTGGTACCCGATGAAGTGCTGCGTCCGCTGCCCAAGGCCTACGTGCTGACGTGTGAATACGACGTGCTGCGGGACGACGGCGTGATGTACGTCACGCGCTTGCGTCAGGCCGGGGTGGACGTGACGCACGAACATTACCCAGCAGGGTTCCACGGCGCCATTATGCTCACTGTGTGGCCCACTGACTTTGAAATTGCACGAAGGATGGTGGACAACTATATACAGTGGCTCAAGCTAAATTTGTAAACTTTACGATTTGAGTGCTGTGATTGTACCAAATTTGCGAATGACACAACTTGGCAAAGTTTTATGACTATTgtgaattatatattttgcaaAATTAAGTAAGTTATTTAAACAATAGCTTTACATTCCTTCTCTCAGACGTCATCTGGGCACCAGGCTGTGGTTAGATGTTCAACATTGCTTTTgtaatgtaaccaaatgtattatatgtgtttgtttcatgctgtttacatgctgTTTAGCTGCTGCTGACTCTTCTTTGGgggtattttgttttcttttttttaaagggcacAGTTTTTGAGTTTTTCTTGCTTCATCCTGGATATAGAGTAGTCTCTTCACTGctgactctttttttattttctcaagtCTTAATATTCTTAATATTCTCATGACCTGGattcaacaaaaacaaaactccCTATTTCTACTTCTCTATGTGATGCCCTATCTATGTGTACCAGTCTGTTAATAACTTTGCTAATCTTGCCAGTTTTTTATCCTTTCCTGAAATGACAGAGGAATCGACCATTTTTTCTACAGTACTGTTAATCACATTTGTGTTATCACtctgtatgaatgaatgtaCTTGATAGGATTCAGTTTGACAAGCAGTAAAAAGTCAACTGAAGGTT
>XM_022678813.1
taaaaaaaaaataatatatgggTTAAGAGCAGCACCAGCTGATCCACAGAACAGCGAGACGCAGACTTTAGTGAGCTGTTGGGGCTGAAGGACTACATGGGGGTGATGATGTTCATCACGTTTGCGGAACAAGTGGTGCCTGTGTCTGATGAGCGGGTGCAGGTGTCAGAAGAGCTGTTTGATGgtgtggaggtggtggtgtATCAGCCCAGGCAGGAGAAAGGAGCTGGAGAGGCGAGGAGGGCCATCATCTATCTGCACGGGGGAGGATGGTGCCTGGGCAGCTCCAGAATGGGACCTTATGATCTTATGGCCAGACAGATGGTTACAGAGCTCAATGCGGTTGTTGTTTCTGTAGAGTACCGCCTGGCCCCAGCTCATCGATTTCCTGCCCCGTTTGAGGACGTGTACCGTGTCGTCAAGTACTTGTTCCAGCCGGACGTCCTGGAAAGGTACAAAGTGGACCGAGAGCGGGTGGCCGTGTCTGGGGACAGTGCAGGAGGAAACCTGGCGGCTGCAGTGACCCAGCAGTTGCAGTTGGAACCAGAGAACTCTATAAAGCTGAAGGTGCAGGCCTTGCTCTACCCAGTCCTGCAGGCCGTGGACCTCTACACGCCATCCTACCAGCAGAACCAGAACATGCCCATCCTGCCGCGCACGCTCATGGTGCGCTTCTGGAGCGAGTACTTCTCCAGTGATAAGTCTCTCTTCAGGGCCATGATGGCCAACGACCACAACGGCCCCGAATCTGCCGCAATGCTCAAGTTTGTTAACTGGAGCGCTTTCCTGCCCGAGTCGTATCGCCGGGCGTACAATTACAGCGCGCCTCCTGTAGCGCAGACTGAAACAGACCAGCACTCCAACGAGCCAGCTCGCTCCCTCGTAGACCCGCGGGCCTCACCCCTGTTGGTACCCGATGAAGTGCTGCGTCCGCTGCCCAAGGCCTACGTGCTGACGTGTGAATACGACGTGCTGCGGGACGACGGCGTGATGTACGTCACGCGCTTGCGTCAGGCCGGGGTGGACGTGACGCACGAACATTACCCAGCAGGGTTCCACGGCGCCATTATGCTCACTGTGTGGCCCACTGACTTTGAAATTGCACGAAGGATGGTGGACAACTATATACAGTGGCTCAAGCTAAATTTGTAAACTTTACGATTTGAGTGCTGTGATTGTACCAAATTTGCGAATGACACAACTTGGCAAAGTTTTATGACTATTgtgaattatatattttgcaaAATTAAGTAAGTTATTTAAACAATAGCTTTACATTCCTTCTCTCAGACGTCATCTGGGCACCAGGCTGTGGTTAGATGTTCAACATTGCTTTTgtaatgtaaccaaatgtattatatgtgtttgtttcatgctgtttacatgctgTTTAGCTGCTGCTGACTCTTCTTTGGgggtattttgttttcttttttttaaagggcacAGTTTTTGAGTTTTTCTTGCTTCATCCTGGATATAGAGTAGTCTCTTCACTGctgactctttttttattttctcaagtCTTAATATTCTTAATATTCTCATGACCTGGattcaacaaaaacaaaactccCTATTTCTACTTCTCTATGTGATGCCCTATCTATGTGTACCAGTCTGTTAATAACTTTGCTAATCTTGCCAGTTTTTTATCCTTTCCTGAAATGACAGAGGAATCGACCATTTTTTCTACAGTACTGTTAATCACATTTGTGTTATCACtctgtatgaatgaatgtaCTTGATAGGATTCAGTTTGACAAGCAGTAAAAAGTCAACTGAAGGTT

Function

NR:

description
arylacetamide deacetylase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0052689 carboxylic ester hydrolase activity molecular_function

KEGG:

id description
K13616 AADAC; arylacetamide deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230633.3 True 1958 mRNA 0.49 5 7821981 7837425
XM_022678813.1 False 1790 mRNA 0.48 5 7822210 7837425

Neighbor

gene id symbol gene type direction distance location
neu4 neu4 coding upstream 194441 7620597 ~ 7627540 (+)
srprb srprb coding upstream 210370 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 281845 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 875013 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 880784 6939059 ~ 6941197 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 154069 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 338684 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 460819 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 491873 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 531944 8369369 ~ 8373186 (+)
G150104 NA non-coding upstream 14810 7806866 ~ 7807171 (+)
G150069 NA non-coding upstream 81893 7679668 ~ 7740088 (+)
G150065 LOC108424050 non-coding upstream 162303 7654428 ~ 7659678 (+)
G150060 NA non-coding upstream 174095 7647623 ~ 7647886 (+)
G150015 cux1 non-coding upstream 438003 7374013 ~ 7383978 (+)
LOC111194509 NA non-coding downstream 28685 7866110 ~ 7873133 (+)
G150132 NA non-coding downstream 38770 7876195 ~ 7877950 (+)
G150203 NA non-coding downstream 131352 7968777 ~ 7969064 (+)
G150196 NA non-coding downstream 143669 7981094 ~ 7981400 (+)
G150235 NA non-coding downstream 291041 8128466 ~ 8128760 (+)
G150099 NA other upstream 16727 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 570615 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 874045 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1235612 6583046 ~ 6586369 (+)
G149754 NA other upstream 2094561 5725269 ~ 5727420 (+)
G150131 NA other downstream 37215 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 811405 8648830 ~ 8656708 (+)
G150579 NA other downstream 1718234 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2013793 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 2304699 10142124 ~ 10152717 (+)

Expression


Co-expression Network