LOC103022780 (myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843)


Basic Information

Item Value
gene id LOC103022780
gene name myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7517004 ~ 7540136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230642.3
GTGAGTATGCTTTGTTGGActcacatataaaacagtagCAGTGACTCTATTGTTTGGCCTTTGACTGACCATCTGCAGGAACTCAGCCACCGTCACAATGTCGCCCAAAAAAGCCAAGAAGAAGGAGTCAGGAGCCAGCTCCAACGTGTTCACCATGTTCGAGCAGTCTCAGATCCAGGAGTTCAAGGAGGCGTTCACCATCATGGACCAGAACAGAGACGGCTTCATCGACAAGAACGACCTGAGAGACACGTTCGCCGCTGTGGGCCGCCTGAACGTAGGGAACGATGAGCTGGATGACATGCTGAAAGAAGCGCCTGGCGCCATCAACTTCACAGTGTTCCTCAGCATGTTCGGGGAGAAGCTTAAAGGCACGGACCCAGAGGAGACCATTCTGAACGCCTTCAAGATGTTTGACCCAGAGGGAACAGGCTTCCTCAAGGGAGATGAGATCAAATATTACCTGATGTCTCAAGCGGACAAGTTTTCTGAAGCTGAGGTGAACCAGATGTTCACTAACTTCCCTCTGGACGTCTCTGGAAACCTGGACTATAAGAACCTGTGCTACGTCATCACACATGGAGAGGACAAGGAGCAGGAGTGAGGAGTCGAGGAGAAACCTTCCACCTGTCTGTAAATAGTTTCCTTCATCAGTCTGAACACCATCGTCCATCATCATAGAACTCTGAAGATGAATAAAGTCATTTTTGGAGAGTAAATCA
>XM_022678801.1
tactgaaaactgtttatttggATTGGGGCTGGATGGCGTGAGCTGAGGAGGGAAGAGGAGTGCAGTATTGATCAGAGGAGCAGCTCAGTGCCGGCCGCGCCGCTTCACGCATGAGCTCACTATGTCGCCCAAAAAAGCCAAGAAGAAGGAGTCAGGAGCCAGCTCCAACGTGTTCACCATGTTCGAGCAGTCTCAGATCCAGGAGTTCAAGGAGGCGTTCACCATCATGGACCAGAACAGAGACGGCTTCATCGACAAGAACGACCTGAGAGACACGTTCGCCGCTGTGGGCCGCCTGAACGTAGGGAACGATGAGCTGGATGACATGCTGAAAGAAGCGCCTGGCGCCATCAACTTCACAGTGTTCCTCAGCATGTTCGGGGAGAAGCTTAAAGGCACGGACCCAGAGGAGACCATTCTGAACGCCTTCAAGATGTTTGACCCAGAGGGAACAGGCTTCCTCAAGGGAGATGAGATCAAATATTACCTGATGTCTCAAGCGGACAAGTTTTCTGAAGCTGAGGTGAACCAGATGTTCACTAACTTCCCTCTGGACGTCTCTGGAAACCTGGACTATAAGAACCTGTGCTACGTCATCACACATGGAGAGGACAAGGAGCAGGAGTGAGGAGTCGAGGAGAAACCTTCCACCTGTCTGTAAATAGTTTCCTTCATCAGTCTGAACACCATCGTCCATCATCATAGAACTCTGAAGATGAATAAAGTCATTTTTGGAGAGTAAATCA
>XM_022678802.1
tgaaaactgtttatttggATTGGGGCTGGATGGCGTGAGCTGAGGAGGGAAGAGGAGTGCAGTATTGATCAGAGGAGCAGCTCAGTGCCGGCCGCGCCGCTTCACGCATGAGCTCACTATGGTGATTCGCCCAAAAAAGCCAAGAAGAAGGAGTCAGGAGCCAGCTCCAACGTGTTCACCATGTTCGAGCAGTCTCAGATCCAGGAGTTCAAGGAGGCGTTCACCATCATGGACCAGAACAGAGACGGCTTCATCGACAAGAACGACCTGAGAGACACGTTCGCCGCTGTGGGCCGCCTGAACGTAGGGAACGATGAGCTGGATGACATGCTGAAAGAAGCGCCTGGCGCCATCAACTTCACAGTGTTCCTCAGCATGTTCGGGGAGAAGCTTAAAGGCACGGACCCAGAGGAGACCATTCTGAACGCCTTCAAGATGTTTGACCCAGAGGGAACAGGCTTCCTCAAGGGAGATGAGATCAAATATTACCTGATGTCTCAAGCGGACAAGTTTTCTGAAGCTGAGGTGAACCAGATGTTCACTAACTTCCCTCTGGACGTCTCTGGAAACCTGGACTATAAGAACCTGTGCTACGTCATCACACATGGAGAGGACAAGGAGCAGGAGTGAGGAGTCGAGGAGAAACCTTCCACCTGTCTGTAAATAGTTTCCTTCATCAGTCTGAACACCATCGTCCATCATCATAGAACTCTGAAGATGAATAAAGTCATTTTTGGAGAGTAAATCA
>XM_022678803.1
TGCAAATTCCACACCTGGAATCAAATCTAGACCCTTTACCTGCTGGACTGATGATGGATAATAAACAAGTCGCCCAAAAAAGCCAAGAAGAAGGAGTCAGGAGCCAGCTCCAACGTGTTCACCATGTTCGAGCAGTCTCAGATCCAGGAGTTCAAGGAGGCGTTCACCATCATGGACCAGAACAGAGACGGCTTCATCGACAAGAACGACCTGAGAGACACGTTCGCCGCTGTGGGCCGCCTGAACGTAGGGAACGATGAGCTGGATGACATGCTGAAAGAAGCGCCTGGCGCCATCAACTTCACAGTGTTCCTCAGCATGTTCGGGGAGAAGCTTAAAGGCACGGACCCAGAGGAGACCATTCTGAACGCCTTCAAGATGTTTGACCCAGAGGGAACAGGCTTCCTCAAGGGAGATGAGATCAAATATTACCTGATGTCTCAAGCGGACAAGTTTTCTGAAGCTGAGGTGAACCAGATGTTCACTAACTTCCCTCTGGACGTCTCTGGAAACCTGGACTATAAGAACCTGTGCTACGTCATCACACATGGAGAGGACAAGGAGCAGGAGTGAGGAGTCGAGGAGAAACCTTCCACCTGTCTGTAAATAGTTTCCTTCATCAGTCTGAACACCATCGTCCATCATCATAGAACTCTGAAGATGAATAAAGTCATTTTTGGAGAGTAAATCA

Function

symbol description
myl10 Predicted to enable calcium ion binding activity. Is expressed in adaxial cell; heart; slow muscle cell; and somite. Orthologous to human MYL10 (myosin light chain 10).

NR:

description
myosin regulatory light chain 2B, cardiac muscle isoform-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230642.3 False 722 mRNA 0.49 7 7529540 7540136
XM_022678801.1 False 746 mRNA 0.51 8 7517004 7540136
XM_022678802.1 True 748 mRNA 0.51 8 7517007 7540136
XM_022678803.1 False 691 mRNA 0.49 7 7526026 7540136

Neighbor

gene id symbol gene type direction distance location
LOC111194504 NA coding upstream 570036 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 575807 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 578021 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 611363 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 778970 6737961 ~ 6738034 (+)
srprb srprb coding downstream 66353 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 80461 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 281845 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 451358 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 635973 8176109 ~ 8179619 (+)
G150015 cux1 non-coding upstream 133026 7374013 ~ 7383978 (+)
G150002 NA non-coding upstream 232668 7273205 ~ 7284336 (+)
LOC111194505 NA non-coding upstream 262413 7253026 ~ 7254591 (+)
G149960 NA non-coding upstream 623353 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 689232 6769964 ~ 6827772 (+)
G150060 NA non-coding downstream 107487 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 114292 7654428 ~ 7659678 (+)
G150069 NA non-coding downstream 139532 7679668 ~ 7740088 (+)
G150104 NA non-coding downstream 266730 7806866 ~ 7807171 (+)
LOC111194509 NA non-coding downstream 325974 7866110 ~ 7873133 (+)
LOC111194506 NA other upstream 265638 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 569068 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 930635 6583046 ~ 6586369 (+)
G149754 NA other upstream 1789584 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 2258143 5227918 ~ 5258861 (+)
G150099 NA other downstream 229548 7769684 ~ 7805254 (+)
G150131 NA other downstream 334504 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1108694 8648830 ~ 8656708 (+)
G150579 NA other downstream 2015523 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2311082 9851218 ~ 9852854 (+)

Expression


Co-expression Network