LOC103028887 (LOC108430178,LOC108280576,LOC107566471,LOC107691105)


Basic Information

Item Value
gene id LOC103028887
gene name LOC108430178,LOC108280576,LOC107566471,LOC107691105
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3585245 ~ 3632868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231099.3
tgagctgctgctgctgttgctgatgCTGCTGGTGATGTTGCTGCTGCCGCTGGCCGAGGTGCTGCTGCCCGGCTGACCGTAAAAGACGGACGAAATGTGGGGAGGCGGCGGCGCGGCTCACGATCCCTTCATGGAATGTGGATGAGCAGAAGTCGTGGGACGCGGGGAGAAGATTAAACGGCTGTTTTTGCGCGGAAATGCGGGGAAACGAGGCTTTCTGACGGAGAGGAAAAACCCAAGGCGCCCTTGATTTGAGGTGGAGCGACCGTTGGAGAAAGACCGTTGGAAAAAAACAGCCgttacagtttaaataaaaataaaaaaataaaattcaaaattcGAAAAGCATGAACGCGCCGTTCTTCCCGCGGGGGCCGAGGCTGGAGCTCGCGCACACGGCgctggtgtgggtgtgtgtgtcgCTGTGTGTCGTGTGTTCGGCGGTGGGAGAAGATGATTTTAGTGTGGAGGACTGGTTAGAGAGGTACGGCTACCTCCACCATACTGAACCCAACATGGCTGTCCTGCGCTCGGCCCAGACCGTGCAGTCGGCCATCGCTGCCATGCAGCGCGTCTACGGCCTCAATGTCACGGGCAGTTTAGACCAGAGCACTATAGCCTGGATGAAGAAGCCGAGGTGTGGAGTCCCAGATCAACTGAAGATCTCCTCGAGCTCGAGGTCACGGAAGCGGCGCTACGCTCTCACCGGTCAAAAGTGGCAGCGTACACACATCACATACAGCATAAAGAATGTGACCCCTAAAGTGGGGGCCCGGGAAACCCACGAGGCCATCAGACGGGCTTTCGATGTGTGGCAGGGCGTCACGCCGCTGAACTTCGAGGCCGTCCCCTACAGTGCTCTGGAGAGCGGCAAGAGGGACGTGGACATCACCATCATCTTCGCCTCCGGTTTCCACGGTGACAGCTCACCCTTCGATGGAGAAGGAGGGTTTCTGGCCCACGCCTACTTCCCAGGACCTGGCATAGGGGGCGACACACACTTCGACTCAGACGAACCCTGGACCCTGGGCAACCCCAACCATGATGGTGAGAGAATGGCAGGCAATGATCTGTTCCTGGTGGCAGTGCACGAACTGGGCCATGCTCTGGGACTGGAGCACTCCAACGACCCCACCGCTATAATGGCTCCTTTCTACCAGTATATGGACACTGAGAGCTTCAAGCTGCCTCACGATGACCTGCAGGGCATCCAGAAAATATACGGTCCTCCAGACAGGAACCCTCAGCCAACCAGACTGCTCACAACAGCCCCGCCTCCTCGCCTTCACCCTCCCTCAGATCCTCGTAAACCAGACCGTCAGAACCGCGCTCATCGACCGCCACAGCGATCCAAACCCTCCCACCCCAACTCCAAACCCAACATCTGTGACGGAGGCTTCAACACCCTGGCCATCCTACGACAAGAGCTGTTCGTCTTTAAgGACCAGTGGTTCTGGAGGGTGCGGGACAACTCGGTGGTACCTGGTTACCCCATGCAGATCAGCTACTTCTGGAAAGGCCTGCCGCCCAAGATCGATGCGGTTTATGAGAACAGTGAGGGCAAGTTCGTCTTTTTTAAAGgtCACCGGTTCTGGGTGTTCAAGGATACTACGCTGCAGCCCACGTACCCTCAGGACATCTCTCTGTTCGGCAGCGGCATGCCCACTCAGAACATCGAGACGGCCGTGTGGTGGGAGGACGTGGCCAAAACCTACTTCTTCAAAGGGGACAGATACTGGAGGTACAACGAGGACATGAGGACCATGGACCCTGGCTACCCCAAACCCATCACCGTGTGGAAGGGTATCCCTGACTCTCCTCAGGGGGCTTTCGTGGACAAAGCTAACGGTTTCACATACTTCTACAAAGGGAAGGAATACTGGAAGTTCAACAACCTCCGGCTGCGGGTGGAGCCTGGATACCCCAGGTCCATCTTGAGAGACTTCATGGGCTGCGACGGCCTACCCTCAGACCCAGACTGGGACTGGATCCAGCCGCAGGAGGAGGAGATCCCGCACTACGACCACGACGACGTGGACATCGTCCGCAAGCTGGAGAGCACGGGCGGCACCGAGAAAGCGGTGGCCATCGCCATCCCCTGCGTCCTGGCCCTCTGCATGATGGTCCTGCTGCACACCGTCTTCCGGGTCAAGAAGAAGGACACTCAGCGGCACATACTGTACTGCAAACGCTCCATGCAGGAATGGGTTTGAAACGGAAGGGGGTTCAATGCCCTCGTTCCAAAGACTTTTTATGGATCTTATGGTTTGAGAAACCAACCTAAACCATAGACGTTAAAAATGTGACAGAGATAAGACATGTCATGTGTTGGTTTCTTTGCCAACACCAAGGGATGGTGTAGAACCTGCTACGCAGTCAGTAGAAccaatccaatacttttggtcAACCTCCTTTAATACGAGGAACGTGACATTGGTTCTTTCCAAAGGAGTGGTCTAGAACTTCTATCAAATCTCTTAAAATGACCCAAGCAGGAACGTTTTTGACAGGAACAGTCCGTCAACTATTTCTGGCATTGAAGAAAGAAACCTCCTCAAAAAGGGGCATGCCATCGTCTCTTGCCAAAGTGGTGGTAGAAAGCAGAACTCGGATCCTATCAAATTAGGATCAGATGGACGTGAGGAGGCCGAAACGAAACAGACAGCATGCTGACGCTCGCCTCATGTTGTCTGATCGTTCTCTGAGCTGCTGTTGGTGTACATGCTGTCCAAGCCATTTCCAGACTTCTCAACTTCTTGAAAACGGGAACTCTGAACAagtcatcatttaaaaatggaaaTTTTCAGCGACAAAATGATGTATCCTCTTTATGATGCACAGTTCAGCCAGAATATTACGACCACCTTTTTGTTTCTGCATATAGGACACTTCTAGAACACTTAGATTCACAGATTTATAATTACTGACTGAAGTCATGTATCTGTTTCTATACATACTTTACTATCATTCAACTTTTACCTGtactataaaaaagaaaacttaaaattCTACTTAGTTCtacttaatgtgatttttcaaGTCAACTGAAcaaaaactgaattgaattgaattgcaCACTAAAATCTAGCAAACTAATATAGCTTAACTAATTGCCTCAACTaactttattaagtttcttgtttaAAAGTTGGTGTATCTAAGCTGCTTtatggtggttttctctcctaaAGGTTGAAAGGAGGTTAATATAGGATgataatagaaatagaaaaatattgtatttttcgaACCTTTTTCAGTGAGTTTTCagtcaagtttctccagcactaaggctgggtgcagcagcattagcagcaatAGCTGCTAACAGCAGAGCTAGCGATACATAAATGCCTCCCAATAGCTCTAAACTAagtaaccctgagtgttcctgtatCCGAGGATACTATCAGCTAGgactacagtcagatatactcgcctctaaatggtgaaagagcttgcgctgcagttagcagctaatgctaatgc
>XM_007231100.3
gtgagctgctgctgctgttgctgatgCTGCTGGTGATGTTGCTGCTGCCGCTGGCCGAGGTGCTGCTGCCCGGCTGACCGTAAAAGACGGACGAAATGTGGGGAGGCGGCGGCGCGGCTCACGATCCCTTCATGGAATGTGGATGAGCAGAAGTCGTGGGACGCGGGGAGAAGATTAAACGGCTGTTTTTGCGCGGAAATGCGGGGAAACGAGGCTTTCTGACGGAGAGGAAAAACCCAAGGCGCCCTTGATTTGAGGTGGAGCGACCGTTGGAGAAAGACCGTTGGAAAAAAACAGCCgttacagtttaaataaaaataaaaaaataaaattcaaaattcGAAAAGCATGAACGCGCCGTTCTTCCCGCGGGGGCCGAGGCTGGAGCTCGCGCACACGGCgctggtgtgggtgtgtgtgtcgCTGTGTGTCGTGTGTTCGGCGGTGGGAGAAGATGATTTTAGTGTGGAGGACTGGTTAGAGAGGTACGGCTACCTCCACCATACTGAACCCAACATGGCTGTCCTGCGCTCGGCCCAGACCGTGCAGTCGGCCATCGCTGCCATGCAGCGCGTCTACGGCCTCAATGTCACGGGCAGTTTAGACCAGAGCACTATAGCCTGGATGAAGAAGCCGAGGTGTGGAGTCCCAGATCAACTGAAGATCTCCTCGAGCTCGAGGTCACGGAAGCGGCGCTACGCTCTCACCGGTCAAAAGTGGCAGCGTACACACATCACATACAGCATAAAGAATGTGACCCCTAAAGTGGGGGCCCGGGAAACCCACGAGGCCATCAGACGGGCTTTCGATGTGTGGCAGGGCGTCACGCCGCTGAACTTCGAGGCCGTCCCCTACAGTGCTCTGGAGAGCGGCAAGAGGGACGTGGACATCACCATCATCTTCGCCTCCGGTTTCCACGGTGACAGCTCACCCTTCGATGGAGAAGGAGGGTTTCTGGCCCACGCCTACTTCCCAGGACCTGGCATAGGGGGCGACACACACTTCGACTCAGACGAACCCTGGACCCTGGGCAACCCCAACCATGATGGCAATGATCTGTTCCTGGTGGCAGTGCACGAACTGGGCCATGCTCTGGGACTGGAGCACTCCAACGACCCCACCGCTATAATGGCTCCTTTCTACCAGTATATGGACACTGAGAGCTTCAAGCTGCCTCACGATGACCTGCAGGGCATCCAGAAAATATACGGTCCTCCAGACAGGAACCCTCAGCCAACCAGACTGCTCACAACAGCCCCGCCTCCTCGCCTTCACCCTCCCTCAGATCCTCGTAAACCAGACCGTCAGAACCGCGCTCATCGACCGCCACAGCGATCCAAACCCTCCCACCCCAACTCCAAACCCAACATCTGTGACGGAGGCTTCAACACCCTGGCCATCCTACGACAAGAGCTGTTCGTCTTTAAgGACCAGTGGTTCTGGAGGGTGCGGGACAACTCGGTGGTACCTGGTTACCCCATGCAGATCAGCTACTTCTGGAAAGGCCTGCCGCCCAAGATCGATGCGGTTTATGAGAACAGTGAGGGCAAGTTCGTCTTTTTTAAAGgtCACCGGTTCTGGGTGTTCAAGGATACTACGCTGCAGCCCACGTACCCTCAGGACATCTCTCTGTTCGGCAGCGGCATGCCCACTCAGAACATCGAGACGGCCGTGTGGTGGGAGGACGTGGCCAAAACCTACTTCTTCAAAGGGGACAGATACTGGAGGTACAACGAGGACATGAGGACCATGGACCCTGGCTACCCCAAACCCATCACCGTGTGGAAGGGTATCCCTGACTCTCCTCAGGGGGCTTTCGTGGACAAAGCTAACGGTTTCACATACTTCTACAAAGGGAAGGAATACTGGAAGTTCAACAACCTCCGGCTGCGGGTGGAGCCTGGATACCCCAGGTCCATCTTGAGAGACTTCATGGGCTGCGACGGCCTACCCTCAGACCCAGACTGGGACTGGATCCAGCCGCAGGAGGAGGAGATCCCGCACTACGACCACGACGACGTGGACATCGTCCGCAAGCTGGAGAGCACGGGCGGCACCGAGAAAGCGGTGGCCATCGCCATCCCCTGCGTCCTGGCCCTCTGCATGATGGTCCTGCTGCACACCGTCTTCCGGGTCAAGAAGAAGGACACTCAGCGGCACATACTGTACTGCAAACGCTCCATGCAGGAATGGGTTTGAAACGGAAGGGGGTTCAATGCCCTCGTTCCAAAGACTTTTTATGGATCTTATGGTTTGAGAAACCAACCTAAACCATAGACGTTAAAAATGTGACAGAGATAAGACATGTCATGTGTTGGTTTCTTTGCCAACACCAAGGGATGGTGTAGAACCTGCTACGCAGTCAGTAGAAccaatccaatacttttggtcAACCTCCTTTAATACGAGGAACGTGACATTGGTTCTTTCCAAAGGAGTGGTCTAGAACTTCTATCAAATCTCTTAAAATGACCCAAGCAGGAACGTTTTTGACAGGAACAGTCCGTCAACTATTTCTGGCATTGAAGAAAGAAACCTCCTCAAAAAGGGGCATGCCATCGTCTCTTGCCAAAGTGGTGGTAGAAAGCAGAACTCGGATCCTATCAAATTAGGATCAGATGGACGTGAGGAGGCCGAAACGAAACAGACAGCATGCTGACGCTCGCCTCATGTTGTCTGATCGTTCTCTGAGCTGCTGTTGGTGTACATGCTGTCCAAGCCATTTCCAGACTTCTCAACTTCTTGAAAACGGGAACTCTGAACAagtcatcatttaaaaatggaaaTTTTCAGCGACAAAATGATGTATCCTCTTTATGATGCACAGTTCAGCCAGAATATTACGACCACCTTTTTGTTTCTGCATATAGGACACTTCTAGAACACTTAGATTCACAGATTTATAATTACTGACTGAAGTCATGTATCTGTTTCTATACATACTTTACTATCATTCAACTTTTACCTGtactataaaaaagaaaacttaaaattCTACTTAGTTCtacttaatgtgatttttcaaGTCAACTGAAcaaaaactgaattgaattgaattgcaCACTAAAATCTAGCAAACTAATATAGCTTAACTAATTGCCTCAACTaactttattaagtttcttgtttaAAAGTTGGTGTATCTAAGCTGCTTtatggtggttttctctcctaaAGGTTGAAAGGAGGTTAATATAGGATgataatagaaatagaaaaatattgtatttttcgaACCTTTTTCAGTGAGTTTTCagtcaagtttctccagcactaaggctgggtgcagcagcattagcagcaatAGCTGCTAACAGCAGAGCTAGCGATACATAAATGCCTCCCAATAGCTCTAAACTAagtaaccctgagtgttcctgtatCCGAGGATACTATCAGCTAGgactacagtcagatatactcgcctctaaatggtgaaagagcttgcgctgcagttagcagctaatgctaatgc

Function

NR:

description
PREDICTED: matrix metalloproteinase-16-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231099.3 True 3489 mRNA 0.51 10 3585246 3632868
XM_007231100.3 False 3475 mRNA 0.51 10 3585245 3632868

Neighbor

gene id symbol gene type direction distance location
LOC103030995 cables1,LOC108430174 coding upstream 225394 3295980 ~ 3359851 (+)
gata6 gata6 coding upstream 377327 3198785 ~ 3207918 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 445887 3028383 ~ 3139358 (+)
LOC103027018 LOC108430159 coding upstream 617668 2937301 ~ 2967577 (+)
LOC103030361 LOC108430157 coding upstream 693934 2797862 ~ 2891311 (+)
pter pter coding downstream 46128 3678996 ~ 3682521 (+)
LOC103047776 NA coding downstream 320535 3953403 ~ 3998059 (+)
LOC103021386 NA coding downstream 488447 4121315 ~ 4123410 (+)
LOC111194481 LOC108433078 coding downstream 637149 4270017 ~ 4286199 (+)
LOC111194482 NA coding downstream 751991 4384859 ~ 4386588 (+)
G149142 NA non-coding upstream 122025 3421230 ~ 3463220 (+)
G149130 npc1,LOC107747515 non-coding upstream 200412 3381943 ~ 3384833 (+)
G149126 NA non-coding upstream 217108 3366452 ~ 3368137 (+)
G149109 NA non-coding upstream 300023 3284724 ~ 3285222 (+)
G149040 NA non-coding upstream 311051 3223417 ~ 3274194 (+)
G149159 NA non-coding downstream 5207 3638075 ~ 3638954 (+)
G149175 NA non-coding downstream 68288 3701156 ~ 3725867 (+)
G149191 NA non-coding downstream 104493 3737361 ~ 3739572 (+)
G149195 NA non-coding downstream 123298 3756166 ~ 3769759 (+)
LOC111194476 NA non-coding downstream 247264 3880132 ~ 3881275 (+)
LOC103027938 NA other upstream 575179 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1181891 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 1391520 2003599 ~ 2193725 (+)
G148599 NA other upstream 1470780 2112673 ~ 2114465 (+)
G148442 NA other upstream 2379845 1200285 ~ 1205400 (+)
G149226 NA other downstream 358942 3991810 ~ 4009735 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 494081 4126949 ~ 4131384 (+)
G149256 NA other downstream 526332 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 659615 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 872845 4505713 ~ 4512310 (+)

Expression


Co-expression Network