LOC103037413 (foxl2)


Basic Information

Item Value
gene id LOC103037413
gene name foxl2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13734809 ~ 13736617 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232295.3
AGGGAAACCAAACAGTATTTTGCCTCCTTCTCATGGCTCATCTGGTGTAGATGAAAGCGAAATCTGGAAGCTGCGGTTCAGAAGCGGAGGAGGTTTCGGGTTTGGTGTTCAGTTACTTCATCGATttgttaaaaaagtttttattgttgtttttggtTCGCTCTTGATGATGGCCACGTTCTTGGGCTCAGAGGAGAGCGCCGTGGACCTCCTAGACTCCAGTTCCAGTGCAGACAACGATCAGATCAAAGAGGGAATACTTTCTGATAGAGGAGCCGAAAAGCCGGACCCCACACAGAAGCCCCCGTACTCGTACGTGGCTTTGATCGCCATGGCCATTCGGGAAAGCTCTGAGAAGCGCCTCACCCTGTCCGGTATTTACCAGTACATCATCACCAAGTTCCCCTTCTACGAGAAGAACAAGAAGGGTTGGCAGAATAGCATCCGCCACAACCTGAGCCTTAACGAGTGCTTTATTAAGGTTCCTCGCGAAGGCGGCGGAGAAAGGAAGGGTAACTATTGGACTCTGGACCCGACGTGTGAAGACATGTTCGAAAAGGGGAACTACCGGCGGCGGAGGCGCATGAAGAGACCATTCAGGCCCCCGCCGTCCCACTTCCAACCCGGCAAGTCTCTCTTCGGTGGGGACGGATACGGGTACCTTTCCCCGCCCAAATATCTGCAGCCCAGCTTCATCAATAACTCCTGGTCTCTGGCTCAGACCCCCGCGCCCGTGTCCTACACGGCCTGCCAGATGGGGAACGGCACCGTGAGCCCTGTGAACGTCAAGGGTTTGCCCACGCATTCCTCCTACAGCCCGTACTCTCGCGTGCAAAGCATGCCTCTGCCAGGCCTCGTGAACTCCTACAATGGCATGAGCCAtcacccccaccacccccaTCACCCACACCCGCATACCCACCACCCGCACCCGCAGCAGCTCAGTCCCGTCACTGCCGCGTCTCCTCCAGTTTCAACGGCCAATGGGACCGGAATCCAGTTCGCATGCTCGCGCCAGCCTGCTGAACTATCAATGATGCACTGCCCTTACTGGGAGCACGAGGGCAAACACACGCGGATTGATATATAACTGTCCCTCGTCATCTCTCCAGTTAGGAACCAGACTGATCTTTGATCTTTACACAtttcagaagaaaataaaaaaaggagagaCTTCTGGAGAACCGGGAGGATCACAACTGGAGGACCAGGATTGTAGGATAAGAACTGGAGTAgtattacattaaaattaaaatatggacCAACTATCAACATTTGTAAAGATTATTATGAATGCTGGTAATTTCacaatttttcattattttgttgaTCATTCTCTCAACGTGTCGACTTTCAGAAAAGTTGAAGAAGCAGTAAAACTGAAGGtgtattttaagttgtttaatGTTCACCAACTTCATAAACAGAATGATCTAGTTGATCCGATCTCCTTGATTCAGTGTtgcatatttatttgtaattgtttGAGAGTAATAGATTGTTTCAGAATTGCTTCAGAATAACATGTAAGCTAAACCATGCTTACCTGAAACGCATTGCATTCTAAAACGGTGTATATCAGTTAATCGATTATGGCCAGATGCGAGTCAGGCATCCCGTTTTGTGCCgaggtcagtttttttttcgaCGAAAGGCTGCTGTGTTAAAGTTACACAAAGGATACAGACAGGTTGTAATGTGTTAACTCAGTTAACTCAAATTtcagttttctatttttttaaataaagtcttttttgtTACAGTTTGATGTGGTGTTGGAATTCTGTGATGCTGCACAACAGGAACGTT

Function

symbol description
foxl2 Enables cysteine-type endopeptidase regulator activity involved in apoptotic process; sequence-specific double-stranded DNA binding activity; and ubiquitin conjugating enzyme binding activity. Involved in several processes, including apoptotic DNA fragmentation; extraocular skeletal muscle development; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in Flemming body and nucleoplasm. Implicated in blepharophimosis, ptosis, and epicanthus inversus syndrome and primary ovarian insufficiency 3.

NR:

description
PREDICTED: forkhead box protein L2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09405 FOXL; forkhead box protein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232295.3 True 1809 mRNA 0.47 1 13734809 13736617

Neighbor

gene id symbol gene type direction distance location
LOC103040694 pax3a,LOC108439877,LOC108280216,LOC107738801 coding upstream 190393 13504905 ~ 13544416 (+)
trnag-ccc_1 NA coding upstream 253770 13480969 ~ 13481039 (+)
trnai-aau_11 NA coding upstream 289940 13444796 ~ 13444869 (+)
trnap-agg_5 NA coding upstream 291897 13442841 ~ 13442912 (+)
c17h2orf82 cunh2orf82 coding upstream 293553 13430528 ~ 13441256 (+)
LOC103043540 NA coding downstream 11041 13747658 ~ 13750852 (+)
nop53 NA coding downstream 258202 13994819 ~ 14002138 (+)
LOC103038690 LOC103038690,LOC108443093,LOC107567262,LOC107655289,LOC100331216,LOC105901416,LOC108280251 coding downstream 271562 14008179 ~ 14038002 (+)
dmac2 NA coding downstream 342413 14079030 ~ 14084542 (+)
LOC103045664 LOC107726114 coding downstream 365273 14101890 ~ 14126748 (+)
G151655 NA non-coding upstream 4695 13729824 ~ 13730114 (+)
G151632 NA non-coding upstream 51696 13678974 ~ 13683113 (+)
LOC111194545 NA non-coding upstream 61683 13668891 ~ 13673126 (+)
G151614 NA non-coding upstream 170445 13562385 ~ 13564364 (+)
G151579 NA non-coding upstream 260941 13466553 ~ 13473868 (+)
G151633 NA non-coding downstream 4710 13741327 ~ 13744062 (+)
G151699 NA non-coding downstream 29038 13765655 ~ 13766027 (+)
G151730 NA non-coding downstream 228928 13965545 ~ 13966254 (+)
G151740 NA non-coding downstream 321608 14058225 ~ 14060372 (+)
G151753 NA non-coding downstream 348650 14085267 ~ 14086143 (+)
G151634 NA other upstream 49962 13646680 ~ 13684847 (+)
G151621 NA other upstream 101207 13600609 ~ 13633602 (+)
LOC103039742 LOC108439864,LOC108280459 other upstream 399733 13297594 ~ 13335076 (+)
LOC107197015 NA other upstream 498072 13230102 ~ 13236737 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other upstream 603356 13101394 ~ 13131453 (+)
pcp4 NA other downstream 21825 13758442 ~ 13762513 (+)
LOC103044755 LOC108443098 other downstream 183808 13920425 ~ 13943509 (+)
sirt2 sirt2,LOC107726128,LOC107655297 other downstream 351952 14088569 ~ 14095319 (+)
LOC107196904 NA other downstream 651798 14388415 ~ 14509200 (+)
G151965 cld3,LOC103033895,LOC108424093 other downstream 1356103 15092720 ~ 15093893 (+)

Expression


Co-expression Network