nop53


Basic Information

Item Value
gene id nop53
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13994819 ~ 14002138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232298.3
CACCGAGGCCCCGCCCCCTCCACTGGTGAGAACATGGCTGCGGCGAGGAGGCACAGGCGTGTGGCGGCTTCACAGCCGGGATTTATTCCTTTAAAATCTGATCTGGACGGGAAATCATTGTCTATCGGACGCAGGAAGCGcgtaaacaaaaacaagaagaagaactGGAACAAATACAGCGATATTAATGATGTGGAGGAGTTTCTGGACGACGTGAGGCTCCAGGAAAGAGCTACAGGAGGTCTTATAGCTGACAAAACAGACGAAAGCCTCTTCTTTGTGGACACTGGAACGAAAGAGAGTGTTCTTGAGCCAgCTTCCAGTGAAGAGACTGCTAAAAAGTCCAAGCCACTTCGGATAGACTTAATTCTACAGCCAACTTCCAATGTCGCCCCACCTAAAGATATCTTGGCCCATCAGCGCCCTAATGCCAAGAAGGAGCGTCGAATTGCCCAAAAGATCCAAAAGCTGACCGACATGGGTGTATTGCCACGCAGGAAACGTCCCCAAAAGGTTCCTGTTAAGGAAAAGCCAATAATCAGTAAAGACCCAGACAGGACCTTCTATGATATCTGGAGTGCAGGCAGCCCTGAGACAGCAGATCCTTACTACCTTGAACAGACCAAGAAGAAGCTGGTTAAGAGAccagagaagatgaatgagaaACCTTCACTTCTTCCAGCTGTTGAAGTCATCGCCCCAGGAGGTTCCTATAATCCTGACTTCCTTTCTCACCAGGCTTTGCTTCTGGAGGCTCATGAGGTTGAAGTGACAAAGCTAAAGGCAGAAACCAAGCTGGCTCGAAAGCTTGCAGTTAACAAGAAAGAATTTGCTACTCAGGAGACCACCTTCAAAGAACAGATTGAAGGGCTGGTTGAGGAAGGGGAGGAGCCAGAAAACGAAACTGAGGGTCCAGAAGCCGTAGCTGAtgctgatgaagatgaagcTGTCGGACCAACGGCGCAGCAGGAGAAGAAAACTGAGAaacagaggaagagggagaaagatGAAAGGATAAAGgAGCTACAGAAGAAAGCAGCACGGCAGATGATTGACAGCAGGCAGCAGCTCTTCAAGCTGCGTTCCATTGAAACAGAGCTGAAGAAGAGGGAGCAGAAAACCAAGATGAGACAGATCAAACGCAAGACCCAGCAGGAGGCTCAGAAAACTCTGCCTCGCCGTCTGGGCAAGCTGAAATTCCAAGCCCCTGATCTTGACGTGCAGCTGAGTGATGAGCTTGCAGGGTCTCTCCGCACACTCAAGCCAGAGGGCAGTGTTCTCAAAGACAGATTCAAGAGCTTACAGAAGAGAAACCTGATcgaacccagagagagagccaagTTCAAGAGGAAACACAAGCTAAAATATGTGGAGAAGAGGGACTTCAAAGAAATTAAATGATCATGATCATCATCATGAAGTCAGCCTCTTTTCATGAGCTTGGATCAGTGCAGTTGATGACACCAGTCCATGAATGAATATTGAGCCTGCCTGTGATGCTGTAatgtaaatacacacaaaaagaaCTGATGACCGAACTGCCTTACCAGTGTGTAAATCCATCATCATTGAGTGACACCTTAATCTCTCATCTCCCAGCATCCTTCCTCCAACCAAACTCAAACCTTCTTCTTGAGGTATACACGTTGGATATAAtttatatgcagctctggaaaaaa

Function

NR:

description
glioma tumor suppressor candidate region gene 2 protein-like

GO: NA

KEGG:

id description
K14840 NOP53, GLTSCR2; nucleolar protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232298.3 True 1679 mRNA 0.48 12 13994819 14002138

Neighbor

gene id symbol gene type direction distance location
LOC103043540 NA coding upstream 243967 13747658 ~ 13750852 (+)
LOC103037413 foxl2 coding upstream 258202 13734809 ~ 13736617 (+)
LOC103040694 pax3a,LOC108439877,LOC108280216,LOC107738801 coding upstream 450403 13504905 ~ 13544416 (+)
trnag-ccc_1 NA coding upstream 513780 13480969 ~ 13481039 (+)
trnai-aau_11 NA coding upstream 549950 13444796 ~ 13444869 (+)
LOC103038690 LOC103038690,LOC108443093,LOC107567262,LOC107655289,LOC100331216,LOC105901416,LOC108280251 coding downstream 6041 14008179 ~ 14038002 (+)
dmac2 NA coding downstream 76892 14079030 ~ 14084542 (+)
LOC103045664 LOC107726114 coding downstream 99752 14101890 ~ 14126748 (+)
chchd2 chchd2,LOC107655825,LOC107730989,LOC107574035,LOC107677095,LOC107567580 coding downstream 228405 14230543 ~ 14234482 (+)
LOC103046290 phkg1,phkg1a,LOC108414041,LOC107747678,LOC107677094,LOC107655811,LOC107567581 coding downstream 233990 14236128 ~ 14247294 (+)
G151730 NA non-coding upstream 28565 13965545 ~ 13966254 (+)
G151699 NA non-coding upstream 228792 13765655 ~ 13766027 (+)
G151633 NA non-coding upstream 250757 13741327 ~ 13744062 (+)
G151655 NA non-coding upstream 264705 13729824 ~ 13730114 (+)
G151632 NA non-coding upstream 311706 13678974 ~ 13683113 (+)
G151740 NA non-coding downstream 56087 14058225 ~ 14060372 (+)
G151753 NA non-coding downstream 83129 14085267 ~ 14086143 (+)
G151755 NA non-coding downstream 84821 14086959 ~ 14087323 (+)
G151772 NA non-coding downstream 182918 14185056 ~ 14186349 (+)
G151776 ech1,LOC107677099,LOC107598793 non-coding downstream 197132 14199270 ~ 14206118 (+)
LOC103044755 LOC108443098 other upstream 51310 13920425 ~ 13943509 (+)
pcp4 NA other upstream 232306 13758442 ~ 13762513 (+)
G151634 NA other upstream 309972 13646680 ~ 13684847 (+)
G151621 NA other upstream 361217 13600609 ~ 13633602 (+)
LOC103039742 LOC108439864,LOC108280459 other upstream 659743 13297594 ~ 13335076 (+)
sirt2 sirt2,LOC107726128,LOC107655297 other downstream 86431 14088569 ~ 14095319 (+)
LOC107196904 NA other downstream 386277 14388415 ~ 14509200 (+)
G151965 cld3,LOC103033895,LOC108424093 other downstream 1090582 15092720 ~ 15093893 (+)
G152262 NA other downstream 1734602 15736740 ~ 15737042 (+)
atg5 atg5,LOC107697282,LOC107661007 other downstream 2288831 16290969 ~ 16339410 (+)

Expression


Co-expression Network