tceanc2 (tceanc2)


Basic Information

Item Value
gene id tceanc2
gene name tceanc2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 440863 ~ 446668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235207.3
CAACTCAAACTTCCTGTTTGTTGTTGTGCTCAGTGTTAAGTGAAAGCAAGACATGAGAAGATCATCAGTGAAGCAGCCAGAACATTAGGACCCGTTTTTAGAGAGGAAGAGCATGGACAGGTTTGTGGTGAAGATCCCTAAGCAGGCTGGAGGACAGCAGCAGGGAGGGAAACCTGCAGAGAAGGTGTACAGACAGGCCACTGTGGAGTCTCTGAAGAGGGTGGTGGTGATTGAGGACATTGAGAGGTTTAAGGCCATGCTGGAACTTCCTGCTCAGACTAAGGAGAACATGCTGATGGCTCTGATGGAGCTGGACAAGAAAGTGCCTTCAAAAGAGGTGCTGAGATCCACCagaattgGTCACACGGTTAATAACGTGCGTAAGCAGCATCCGGACGCTGAGGTGAAGGCTCTGGCGCGGGAAGTCTACACACACTGGAGAACCTTCATCGAGGAGAACGCCAACAAACCCTCTATAGAGGTCCGCAGTGATAAACAGACTGAGGGGCTCCGGAGCAACGCGGTCAAACTCCTCGCTGAGAGCATCGGACCGGAGGTCAGTGATGGGCTGGTGGAGAACATGGAGAGGGAGGTGTTTCATCAGTCCTCTCGTCTGATTAACGTGGTTTATAGAAGAACTATCAGAGCGCTGGTCTTCGCTCTGAAGCACAAACCAGACGTCCGAGCACAAGTGAGGGACGGGACACTCCCTGTCAACACGTTCGTGAGCAATCACAAGAAGAAACAGTGACTCCTACCatcttacttattttattttaattttatgtgaaactttttatactgtatgatttttaaatgctatggtccaatcccatttcacccctgaTCCACcacccctctgttttgtgtgtgctagaggtgtcctgattcttgttaggctggagcggtaggttagggttaggggaaGGTATAGGGCTTGTTAGTccttcatacagagatttttcagaatcactggtaagaaacccacaaatgtaaatattttccaagctaaaagtgacgattagcactattttaccatagtttaatgagtagtttcattgttttaaggccaaattcttcataaaaaaggattaaaaggtcgctagtagtttgtatcagtagctagctagctagctagctaactttcccattccaccttaaatggtgcaacagacagcaggggctgcatcatttaaggtggaacggaaaaataaaacaaaataaaagataatCAAAGcaaatttcagctccccatcacagaggaattaaggaatggacagtAATAAATCATTTCGGCATcatctcccccctttctgaagacaaacGATAAAATACACCCTAacgttaactagttaatcagcagcagcagttaggttgctgaactttagcgctcctgatggttttcccaattcttagggggaggattttaccccttcttcttctaactctgttccaaaaggaagggttacactcaaaaaaaaaaaggtagggGTAAGTAGGAGGtttaaggggtgaaatgggattgggcctataTCATTGGTTGGTTTTAATAATGTTGAAGAGCAGGATGTCCATATTACCTTTAACTAGAGTGCTGTTCAAACAGCATGAACTgaactatataaactatattctCTATAAAGAGAATCCTGTCAGTTtttataaaaccttttaaaataatattagattttttttttgcttcattttttatgtatttttgtcatttttgaatTGAAAAATCCTGTACACATGTCTGACTGTGAACACATACATGAGTAATAATGTGATAATTAACAAAATTGACGTTCATCTAAACTCAGcatcaagaataaaaaaaaaagatgatgatGAACAGATGAAA
>XM_022678604.1
CTAGCAACTCAAACTTCCTGTTTGTTGTTGTGCTCAGTGTTAAGTGAAAGCAAGACATGAGAAGATCATCAGTGAAGCAGCCAGAACATTAGGACCCGTTTTTAGAGAGGAAGAGCATGGACAGGTTTGTGGTGAAGATCCCTAAGCAGGCTGGAGGACAGCAGCAGGGAGGGAAACCTGCAGAGAAGGTGTACAGACAGGCCACTGTGGAGTCTCTGAAGAGGGTGGTGGTGATTGAGGACATTGAGAGGTTTAAGGCCATGCTGGAACTTCCTGCTCAGACTAAGGAGAACATGCTGATGGCTCTGATGGAGCTGGACAAGAAAGTGCCTTCAAAAGAGGTGCTGAGATCCACCagaattgGTCACACGGTTAATAACGTGCGTAAGCAGCATCCGGACGCTGAGGTGAAGGCTCTGGCGCGGGAAGTCTACACACACTGGAGAACCTTCATCGAGGAGAACGCCAACAAACCCTCTATAGAGGTCCGCAGTGATAAACAGACTGAGGGGCTCCGGAGCAACGCGGTCAAACTCCTCGCTGAGAGCATCGGACCGGAGgggctgcatccttcgaaggacgTGGTCTACGAAGGTGTGTCCTTTGAAGGATGGGTAGGCTGCGATGGCAGtactgaaatgggacagtctaccctacggtgtatttcctgtttcctgtttgagattctaCCCTCCACAACCAAAGTGACCTGAGAACCAAAGGGCTGAGAAATGAGCCAGAGATTTTGATCTAGTTTTGCTTCagaccacaaaataccaaattaattaagtccaggttaattaactgtgcagttacttaaatatttttaatgtgaacgg

Function

symbol description
tceanc2 Predicted to be located in nucleus. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2).

NR:

description
transcription elongation factor A N-terminal and central domain-containing protein 2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235207.3 True 1861 mRNA 0.42 4 440867 446668
XM_022678604.1 False 839 mRNA 0.49 4 440863 444508

Neighbor

gene id symbol gene type direction distance location
glmn glmn coding upstream 28273 390978 ~ 412590 (+)
LOC103029320 LOC108436061 coding upstream 83609 338177 ~ 357254 (+)
LOC103031862 NA coding upstream 106845 285164 ~ 334018 (+)
LOC103032182 fam69aa,fam69a,LOC108436064,LOC107716951,LOC107568082 coding upstream 176790 241457 ~ 264073 (+)
mrpl37 mrpl37 coding downstream 12108 458776 ~ 471117 (+)
acot11 acot11 coding downstream 94832 541500 ~ 569439 (+)
tyw3 NA coding downstream 164571 611239 ~ 616353 (+)
lhx8 lhx8,lhx8a,LOC108436043,LOC107693563 coding downstream 233531 680199 ~ 696695 (+)
trnav-aac_10 NA coding downstream 536026 982694 ~ 982766 (+)
G148325 NA non-coding upstream 19748 420797 ~ 421115 (+)
G148323 NA non-coding upstream 35266 403080 ~ 405597 (+)
G148258 NA non-coding upstream 130668 309008 ~ 310195 (+)
G148253 NA non-coding upstream 145653 260245 ~ 295210 (+)
G148249 NA non-coding upstream 171593 264413 ~ 269270 (+)
G148339 NA non-coding downstream 26553 473221 ~ 474195 (+)
G148348 ssbp3 non-coding downstream 45616 492284 ~ 539224 (+)
G148381 NA non-coding downstream 294891 741559 ~ 743791 (+)
G148399 impad1 non-coding downstream 505768 952436 ~ 955851 (+)
G148397 NA non-coding downstream 519401 966069 ~ 968126 (+)
LOC103021490 LOC103021490 other downstream 747867 1194535 ~ 1197577 (+)
G148442 NA other downstream 753617 1200285 ~ 1205400 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 1556931 2003599 ~ 2193725 (+)
G148599 NA other downstream 1666005 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 1846964 2293632 ~ 2403354 (+)

Expression


Co-expression Network