LOC103029326 (LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917)


Basic Information

Item Value
gene id LOC103029326
gene name LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8369369 ~ 8373186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235960.2
AGTCCATCAATGAAATAGtaagaaaggaggaggagaggacaAGAGGAGAAAGGAGGAGAGGAAAGCATTCCCACGCTTTACTCTTACTAACCAGTAGAGTAAACTTTATTATCTCAAAgaccaagaaaagaaaaatagagaaaaatgaAGTTCATCATTGGAATCGGAGGCGTGACCAACGGTGGGAAAACCACACTGACGAAAAGACTTGAGAAGATACTACCAAACTGTTGTGTGGTACATCAAGATGACTTCTTCAAGTGATCACAGCTCTGGACATGGAAGCCATGGTGAACACTGTAAAAGGCTGGATTGAGAACCCGGTGAAGTTCGCTCGCTCTCATGGTGTGACTCTGTCACCCGAGGCTGATGGTTCTGATCCAGAGAGACAAATCCACATTCTGCTTGTCGAGGGCTTTCTGCTCTATAACTACAAACCTCTGATTGAGACCTTCAACAAGTGCTACTATGTCACCATTCCATACGAGGAGTGCAAAAGAAGGAGAAGCACCAGAACCTACACAGTGCCTGACCCTCCCGGCCTGTTCGACGGCCACGTGTGGCCCATGTACTTGAAACACAGGATAGAGATGGAAAACAACTGCAGAGTTATTCAATATCTGGATGGTATGAAGTCAAAGGAAGACATCTACAACCAGGTATACGAGGACATCCAGAACAGTCTGTTGAATAGCTAATAGCGGGTCCAGATCACCTGAAGCTGCCTGTGTATAGAATTGTAAATAGTAGTTGAAGTGAGAGCGCCTTCTGCCATTGAGTGAATCCTGTAAATATGATCAAagaaataacttattttttgaGCCAGTGGCTGAAGCCTGGAATTTTATATCGCCTTACTGTATGTAGTTgtttcttttataaatatgtaaagaagAGGAGTCTGGCTGGACGGCTGTATAACGCGATGCTAACGACGTTTTGTCAGCATATGTTATACTGTGTAGGAGTTGAAACAAAAGAACTGATCCTCATTGAAAGACATTCAAATTCAA
>XM_022678825.1
AGTCCATCAATGAAATAGtaagaaaggaggaggagaggacaAGAGGAGAAAGGAGGAGAGGAAAGCATTCCCACGCTTTACTCTTACTAACCAGTAGAGTAAACTTTATTATCTCAAAgaccaagaaaagaaaaatagagaaaaatgaAGTTCATCATTGGAATCGGAGGCGTGACCAACGGTGGGAAAACCACACTGACGAAAAGACTTGAGAAGATACTACCAAACTGTTGTGTGGTACATCAAGATGACTTCTTCAAGCCCCAAGATCAAATAGAGGTCGGGGAGGACGGCTTTAGACAGTGGGATGTGATCACAGCTCTGGACATGGAAGCCATGGTGAACACTGTAAAAGGCTGGATTGAGAACCCGGTGAAGTTCGCTCGCTCTCATGGTGTGACTCTGTCACCCGAGGCTGATGGTTCTGATCCAGAGAGACAAATCCACATTCTGCTTGTCGAGGGCTTTCTGCTCTATAACTACAAACCTCTGATTGAGACCTTCAACAAGTGCTACTATGTCACCATTCCATACGAGGAGTGCAAAAGAAGGAGAAGCACCAGAACCTACACAGTGCCTGACCCTCCCGGCCTGTTCGACGGCCACGTGTGGCCCATGTACTTGAAACACAGGATAGAGATGGAAAACAACTGCAGAGTTATTCAATATCTGGATGGTATGAAGTCAAAGGAAGACATCTACAACCAGGTATACGAGGACATCCAGAACAGTCTGTTGAATAGCTAATAGCGGGTCCAGATCACCTGAAGCTGCCTGTGTATAGAATTGTAAATAGTAGTTGAAGTGAGAGCGCCTTCTGCCATTGAGTGAATCCTGTAAATATGATCAAagaaataacttattttttgaGCCAGTGGCTGAAGCCTGGAATTTTATATCGCCTTACTGTATGTAGTTgtttcttttataaatatgtaaagaagAGGAGTCTGGCTGGACGGCTGTATAACGCGATGCTAACGACGTTTTGTCAGCATATGTTATACTGTGTAGGAGTTGAAACAAAAGAACTGATCCTCATTGAAAGACATTCAAATTCAA

Function

NR:

description
PREDICTED: nicotinamide riboside kinase 2-like isoform X1

GO: NA

KEGG:

id description
K10524 NRK1_2; nicotinamide/nicotinate riboside kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235960.2 False 1013 mRNA 0.43 7 8369369 8373186
XM_022678825.1 True 1062 mRNA 0.44 8 8369369 8373186

Neighbor

gene id symbol gene type direction distance location
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding upstream 11675 8329298 ~ 8357694 (+)
LOC111194453 NA coding upstream 69786 8298244 ~ 8299583 (+)
LOC103039989 LOC108427187,LOC108429492 coding upstream 189750 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 352283 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 531944 7821981 ~ 7837425 (+)
LOC103032299 NA coding downstream 13116 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 110360 8483546 ~ 8493022 (+)
upf1 upf1,LOC107724030,LOC107696277 coding downstream 121909 8495095 ~ 8519332 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding downstream 148964 8522150 ~ 8580869 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding downstream 294736 8667922 ~ 8680860 (+)
G150269 cplx4c,LOC108427184 non-coding upstream 44721 8313027 ~ 8324648 (+)
G150248 NA non-coding upstream 59935 8257912 ~ 8309434 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding upstream 89487 8276305 ~ 8279882 (+)
LOC111194510 NA non-coding upstream 93863 8271313 ~ 8275506 (+)
G150254 NA non-coding upstream 108369 8207468 ~ 8261000 (+)
G150297 NA non-coding downstream 63409 8436595 ~ 8437402 (+)
G150292 NA non-coding downstream 209258 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 218955 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 266705 8639891 ~ 8640174 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding downstream 269182 8642368 ~ 8647191 (+)
G150131 NA other upstream 490068 7874640 ~ 7879301 (+)
G150099 NA other upstream 564115 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1118003 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1421433 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1783000 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 275644 8648830 ~ 8656708 (+)
G150579 NA other downstream 1182473 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1478032 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1768938 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1818334 10191520 ~ 10279830 (+)

Expression


Co-expression Network