CI01000012_07584742_07586196 (KCNF1B, KCNF1)


Basic Information

Item Value
gene id CI01000012_07584742_07586196
gene name KCNF1B, KCNF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7584742 ~ 7586372 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07584742_07586196.mRNA
ATGTGGACGCTACCGAGGACTCGGTTCGCACACTGTAACCGCTCGTCGAGCAGCGATGAGAAAGAAATCGCCGTGAACATCGGCGGCGTGCGGCTGGTGCTGTGCGGGGACATTCTGAACCGCTATCCGGACAGCAGGCTCGCCGAACTTGTGAACTGCTCAACTCGGAGTTTTGATGTCATTTCATCACTCTGCGATGATTATGACCCTGGGAAACGAGAATTCTACTTCGACAGAGACCCTGACTCGTTTAAATGCATCGTAGAAGTGTACTATTTTGGGGAGATCCATATGAAGCGCGGAATCTGCCCCATTTGTTTTATTAAAGAAATGGAGTTTTGGAAGATTGACTTAAGCTACTTGGACGAATGCTGCAAGAGTAACTTGACCGAGAAGGAGGAAGAGTTGGCGGAGATTGCAGACAAGGTGAAACTGATCCTGGATGATTTGGACTCTGATCCTGACGTGAGCCGCAATGAGAGGTGGCAGAAGTTCGTCTGGAAGCTCATGGAGAAACCAGAGTCCTCGCTCCCAGCACGCGTAATTGCCGTCGTGTCCTTCCTGTTCATTCTAGTGTCATCTGTGGTGATGTGTCTTGGGACCATACCGGACCTCCAGGTGGAGGATTCCGAAGGTAACCGCGTTGAGCACCCGACCCTGGATGCTATCGAGACGGCATGCATCGGATGGTTCACGGTAGAGTACGTACTGCGCCTCGCATCTTCCCCTAACAAGGTGCGCTTCGCGCTCTCCTTCATGAATATGATAGACTTCCTGGCCATTCTGCCGTTCTACGTGGTGCTGGTTCTCACGTACCTCGGCACGGCCATGATGGAGCTGGTCAACGTGCAGCAGGCGGTGCAGGCGCTCCGCATCATGCGCATTGCGCGTATCTTCAAGTTGGCGCGCCATTCTTCTGGCCTACAGACGCTCACGTACGCGCTCAAACGCAGCTTCAAGGAGCTGGGTCTGCTCCTCATGTACATGGGAGTGGGCATCTTCGTGTTTTCCGCACTCGGGTACACCATGGAGCAAAGCCACCCGGAGACGTTGTTCAGAAGCATCCCGCAGTCCTTCTGGTGGGCCATCATCACCATGACCACCGTCGGCTACGGGGACATCTACCCAAAGACCACTCTGGGCCGGTGCAACGCGGCTATCAGTTTTCTGTGCGGGGTTATCGCCATAGCGCTGCCCATACACCCCATCATTAATAACTTTGTCATCTATTACAACAAACAGAAGGTGCTCGAGACCGCCGCTAAGCACGAGCTGGAACTCATGGAGCTGCGCGCGCTCGAACTCGCGGTCAGAAGCGCCTCGCGCAGGTCTGACGCGCCCGGGACCAAGTGGGAAGGTGCCTTGCGCGCATCGCGTAGCGATACATTCATCCCGCTCCTTTCTGGAGCGCACAGAACTGAGAGAGAGCCCGTAAAGAAGAAAAGCCTGACTTAGGACAAAAAGTGAAAAAAAAACTCGATAGGCACTTTAGGTTTCGAGAGAGCTTGTGTTATTATGGTCATTGTGCGCTATAAACTTCTGTGCTGCAATGTGACCGTCAAGCTGCTTGTGCTGTTTTCACTGGACATCAAAATGAGTTTCTCTTCAAAGTGTTATTTTGTCTTAATTAA

Function

symbol description
kcnf1b Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).
kcnf1 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in non-motile cilium assembly and potassium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in ciliary base. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04899 KCNF1, KV5.1; potassium voltage-gated channel subfamily F member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07584742_07586196.mRNA True 1631 mRNA 0.53 1 7584742 7586372

Neighbor

gene id symbol gene type direction distance location
CI01000012_07566408_07581870 RBM25, RBM25A, RBM25B coding upstream 2796 7566408 ~ 7581946 (+)
CI01000012_07548354_07550668 VTI1B coding upstream 33140 7548354 ~ 7551602 (+)
CI01000012_07509419_07535325 ZFYVE26 coding upstream 49417 7509419 ~ 7535325 (+)
CI01000012_07497278_07501713 PLEK2 coding upstream 82444 7497230 ~ 7502298 (+)
CI01000012_07480048_07492395 NA coding upstream 91976 7480048 ~ 7492766 (+)
CI01000012_07645586_07647322 NA coding downstream 57308 7643680 ~ 7647962 (+)
CI01000012_07678377_07700760 ROCK2A, ROCK2 coding downstream 92005 7678377 ~ 7702194 (+)
CI01000012_07769675_07800004 PDSS2 coding downstream 182828 7769200 ~ 7800241 (+)
CI01000012_07806089_07811902 BEND3 coding downstream 218876 7805248 ~ 7811902 (+)
CI01000012_07812015_07812349 BEND3 coding downstream 225643 7812015 ~ 7812653 (+)
G73262 NA non-coding upstream 162853 7420693 ~ 7421889 (+)
G73162 NA non-coding upstream 184465 7395368 ~ 7400277 (+)
G73258 NA non-coding upstream 211928 7372589 ~ 7372814 (+)
G73257 NA non-coding upstream 212334 7372072 ~ 7372408 (+)
G73255 NA non-coding upstream 236840 7347650 ~ 7347902 (+)
G73175 NA non-coding downstream 121303 7707675 ~ 7715446 (+)
G73321 NA non-coding downstream 147924 7734296 ~ 7734698 (+)
G73346 NA non-coding downstream 215549 7801921 ~ 7802123 (+)
G73359 NA non-coding downstream 268971 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 283026 7869398 ~ 7869602 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1660437 5922385 ~ 5929186 (+)
G71623 NA other upstream 1768137 5813517 ~ 5816605 (+)
G71548 NA other upstream 2023309 5550493 ~ 5561433 (+)
G71221 NA other upstream 2044286 5538525 ~ 5540456 (+)
G71218 NA other upstream 2046358 5535852 ~ 5538384 (+)
G73578 NA other downstream 780434 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2635583 10223697 ~ 10236276 (+)
G75533 NA other downstream 3558445 11144817 ~ 11145739 (+)
G76385 NA other downstream 5044383 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location