LOC103039989 (LOC108427187,LOC108429492)


Basic Information

Item Value
gene id LOC103039989
gene name LOC108427187,LOC108429492
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8176109 ~ 8179619 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239950.3
TACGCTGCTGAACAGTgcggagtgagagagagagagagaggctcgcGCTCCCTGAAGGCTCTTCCCGCAGACTCGGCGCTCTTATATAGCGGCTATTTTCGGTAGAGGGGGGGACGAGGCTCTACCTCCATCCTGAACGCCGTTTCCTCCCGCAGCACAATTGGTCCGGTGTTCGGCCGGGAGGAGGAACCGGGGGAGAAAACTCCGCGAGGCTCGCGCTCCTGAACACAGCTGCATGGGACAGAGGACGGAGTGACACGATACGCGTTGGCTCTCAGCCGcaatttcttattattattgctcgtttctgctattttttttctcttgtgtgAACTGAACTTCGACTTTTTGGAGGAAAAATGGCTTTACCTGTAACCATTCTACCCTCCATTTCTACTTTCGCCAACCAGAAGGAGAAACTGTGGGAAAACAGATGGAAAATAGAGGCAGACAAGCCCCTAGCGCCCACGTGTGTCGCTTTCACCGGGATACAAGCCGCGGACGTTTGCCGCGGTGCAAAGGACGACGAGGATCTGAGCGATTACTTGGATCTGGAGTTTATTCTGGCCAACACCAGCGGCCCCGACAGCACAGCTGTGGAGTACAGCTCCGCCACGGCGACAGTGGAGCCCTGCAGCTTGTACCAGCCTGTGCCCACGGAGCACTGCTCACCACCCCCACCCTACACCAGCAGCCTGATGGCAGAGCTGCTGCGCTGTGAGGTGGACAGCACGTACGGCATGGCCGGCAACCCAGTGGCCGTTCAGGGACGTTTTGTAGccaccactgctgctgctgcaggaaaCACCACAGCTCCTGGATTCCCCAGACAGGACTTTGTAGATAACATCAAAGTGGAGCCGTCCATGGATGGCTACGGACCGGTGATGGGCATGGTGCCCCAGAGCTGCCGGAGGGTCAAGCAGGAGGGAGACACGTCCTGCATGATGGCTTTCGAGCAGCCCAGACTGGCTGTTTCTCCACAGGGAGCCGGCAGCATGACCCCGCCGCTCAGCCCGGACGACCGGGCTCACGGCCAGACCCGGCTGTGCCACAGCATGTTTGCACAGAGCTATTACCACCAACCTGCCTACACTCAGTGTGTGCCGCCGCCCTACACACAGGcacagcaccaccaccaccaacaccaccagcagcagcagcagcaacaacagcagcagcagcagcatcagcagcagttcattGGCTTTGAGGACAGTCTCAGCAGCCTGCAGAGGGGCCAAGCGCACGGTGCACTTCTCACACCCCCGTCCTCACCCCTCGAGCTGCTGGAGGCCAAGCCCAAGCGAGGGAGGCGCGCCTGGCCCAGGAAACGAGCCGCCACACACACCTGCACGTTCGCTGGCTGTGGCAAGACGTACACAAAGAGCTCCCATCTCAAAGCACATCACAGAACTCATACCGGCGAGAAGCCTTACCACTGCAACTGGGAAGGCTGCGGCTGGAAGTTCGCCCGCTCCGACGAGCTGACCCGCCACTTCCGCAAGCACACAGGCCACCGGCCCTTCCAGTGCCACCTGTGCGAGCGCGCCTTCTCCAGGTCCGACCACCTGGCCCTGCACATGAAGAGGCACATGTGAGAAGAgaccaaaaaacaacaaaaaaaatcctgaaaacAACCGACCAAAAGAAGCACCGCATCATTACTGCCTTATTTAAGTACCCTGTAAAAGACCAAAagactgttctttttttgtattattattattaatattatttgataAAAGATTTATATTGTTCTTATCCTTTTTTGTAACAATGTAGCTGGTACTACGGATCCACAGAGccgtttttttattgttctctttttttttctattaaaacaaAAGCCATATGAACTGTTTTCGGGGCAAACACCAACCTGCAGGGCTGGTCCTAAATATAGCTATGTTGAAACTGGAAATAGTGTGGTGTgtaagttataaaaaaaaaacaaaagacaaaacagTGCCTTTACAGTGACGGACAAGCTGCCAGAGACGTGCGCAAGCCTGACGACTAGCAAATCCTGGAAAGCAGAAGAAAgtagtgaaaaaataaaaataaccccTACAGAGACTGTATGTATgagtgagtctgtgtgtgtgtgtgtgtgtgtttatgcatgCATACGGGAGTATGCACGGAGACAATGTTTTGCTCATAAAACTGCCACCAAATCACCAATGTTTTGTGCTTTCTTTTTCGAAAACGACCAGAACTgtaattttgcattttgtgatacattctctctctctttctcagccaTTGTTTTGTTTGAACTCTTGAACTTATTGTATCATGGAGGTACAATAATACCTGTTCAGTCCCCAATGTTGTACACTAGCACATATCTATACCAGGGCTAGATGTCCtgagtttcttttttgtttttggttttctaAGTTTTCTGTACAGACGTTTTATATTGTaagtactgtatttattgtacataTTAAACTAAATTTGAGTATA

Function

NR:

description
PREDICTED: Krueppel-like factor 2

GO: NA

KEGG:

id description
K17845 KLF2; krueppel-like factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239950.3 True 2475 mRNA 0.51 3 8176109 8179619

Neighbor

gene id symbol gene type direction distance location
ap1m1 ap1m1,LOC107696211 coding upstream 159023 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 338684 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 548569 7620597 ~ 7627540 (+)
srprb srprb coding upstream 564498 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 635973 7517004 ~ 7540136 (+)
LOC111194453 NA coding downstream 118625 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 149679 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 189750 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 206683 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 303927 8483546 ~ 8493022 (+)
G150239 NA non-coding upstream 20264 8155636 ~ 8155845 (+)
G150235 NA non-coding upstream 47349 8128466 ~ 8128760 (+)
G150196 NA non-coding upstream 194709 7981094 ~ 7981400 (+)
G150203 NA non-coding upstream 207045 7968777 ~ 7969064 (+)
G150132 NA non-coding upstream 298159 7876195 ~ 7877950 (+)
G150245 NA non-coding downstream 8648 8188267 ~ 8190741 (+)
G150254 NA non-coding downstream 27849 8207468 ~ 8261000 (+)
G150248 NA non-coding downstream 78293 8257912 ~ 8309434 (+)
LOC111194510 NA non-coding downstream 91694 8271313 ~ 8275506 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding downstream 96686 8276305 ~ 8279882 (+)
G150131 NA other upstream 296808 7874640 ~ 7879301 (+)
G150099 NA other upstream 370855 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 924743 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1228173 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1589740 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 469211 8648830 ~ 8656708 (+)
G150579 NA other downstream 1376040 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1671599 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1962505 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 2011901 10191520 ~ 10279830 (+)

Expression


Co-expression Network