LOC103025670


Basic Information

Item Value
gene id LOC103025670
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9873966 ~ 9882127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241591.3
TCTGCCACTCGACCAGCAGCACATCGAGTACCACACAGACCCCCATGCGGATGAGGTTTCAGCTGCAGTCTGAATAATGAAAGcCTTCAGCCTGAAAAGCCTTCTTCATCCCTAGACCAAATCTACATTCACCTTCAAATAAATCTAAAGACATGGCAGAACAACAAGAGTATCTGGTGGACGGAAGCCCTCTCATCACCGCAGCCCAGCTAGGCAAGCTTCGCCTGGTCAGACTGCTGGTGGAAGGAGGCGCTCAGGTCAATGAACGCAACCAGCGAGGAGAGACCCCACTGCTGGCCACATGTCGGGCTATGAGGGGTGACCAATCCGGAAGCACCATGCTGAGGCTAATCCGCTTCCTCATTAAGAACCAGGCGGACCCCAACATCCAGGACAAGGCTGGCAGGACTGCCCTCATGTATGCCTGCATGGAAAGGGCTGGTCCTGAAGTGGCTTCTGCCCTAATTTCTGCAGGTGCTGATCCAAGCATGGAGGACTATGCCGGAGCATCAGCTCTAGTTTATGCCATCAATTCCCAAGACCAGGACACCATACAGGTTCTACTGGATGCCTGCAGAGCCAAGGGCCGTGACATCATCATCATTGCTACTGACCTAAGCTCAGATGGAGCCACTGTGACCCGCCGTTACCTGAATGTGCCTCCATCGCCCAACACCTCGCCCGTCTCCTGCATGTCCCCCTCTGACATCGAGCTGAAAACGAGCTCCCCGAGCTCTGAGGCTGAGGGAGAAAACATCTTTAACTTCAGAGCTTCAGGGAAGAGAGGAAGCAGGGTGGGCTCACCTCTACCTCAGGACACGACAAATCGCCAAAGGCTGCATTCTGAGCCTTGGCTGGCCATCCACAACTTGGCCCATCTGAGCCGCACCTACGAGGAAACCACGGGGCAAAGGAATGTgcaagaagaagaggaggtGGCAGGGAACAAGTACGTTGTTCAGCAAGTGGACCCGAGTGGTGGTCCCTGTTCCTCAAAGACTACAGGACACAAATCGAGCAGTGGGCTAGTGGTGCCTCGAAACCATGTGGTCCAGAAGCAGAAACTGGAGTGTCCATCCAGTTTGGAACATCTTCAGAGTCGAAGGAACACTCTACCTGCTCTAAATGGACAAAATTTGCTTAATTTGCCCACCCTTTCCTTTGGTCTTTCAAACTCTGACACTCGCTTAAATGACCAGCCCACCACTCTAACCCTTCCCCCGGTTCCTATCAACAGAAACCTCCACCATACCTCCTGTAGTAGCTCCAGCTCCCTATCTCTGGCACCCCCTGTTTCTCCACGTGAGTACAACACCATGAAGAAGTGGAGGCCTCAAGAGCAGTTGAGTCTGAGGACACAGGTACGTGGTGGTAACTTCCTGCCTCCTCTACCTTCAAACCCTTCCACACGTTTCTGCTCCGGAGAGCCAAGTCCCACACCTAGAGCCGAAGAGACACAGTCCGTCAGACAGGACGGTTCAAGGAGCCGAAGACCTCCACGTCGCCACTCAGTTCAGCTGGAACAAATGAAGCAGGAAGGCAGCACTGAGGAGATCCTCTTCGTCTTTTGAAACGGGAAGGTCAAAAGGACTTCCAACTTCCATGTGTTTCACAACAGTGTGAAAACATCTTAAAATGTCTTGAGACTTGAGACTGGTTTGATAACCAATGCTCTTTAATAGGGAttgtcagttcagttcagttcagttcaggtcAGGTCAGTTCCTGGAAGCCCACATTTCAAGATGGTTTCGATGCCCAGAGCCTGATTCCTTTCATTAGGGCTCATCATAACACATCTTCCACTTAAGATGAGCATGACTGAAAACCATTgagaatttttctttttctaaaaattgtttttttcccactgTTTCCACCATTGATGCGATTAGTTTTGGACTTGATTGCAGACCAAAGCAATCACACTAAGACCCTTAAAAGGAGAAGCTTTCGTTCTGGTCTCAAACAAACTCTGAATCGGTTAATTTTTAGTAAGAATATGATCAGACTGTGATCCGCCACAACCATCAGCTGTACACCTTTATGGTATATTTGTAGTCCTTCTTacactacaaaaaaacaaaatcttagcaagtgaaaatATCTAATGTCAAGGCAACAAatcttatatttgttttaataaatattgtaagtgttcgattattttgcttattgaatataataaagaatgaacaatttaattaattgtcACTTTATGAACCATTCAACCATtttaaaaactcaaaataagcactgGTCAAGCTATTCTCATTCTTGTGTCCAGATTTAagccaaaaaatctaaaaaataaataaataaataaacccgtATTAACACTGACTGCCTTAAAAACtgacttttttattacattttgccAATTACTGTAAAGACTCcataaagtaatgaaacattaaaTGGCACTTTTCTGCTGGATGGTACCAACACTACTGTACTTGACtctattttagcattttttgcaATTTGCAATAGTAAATCTCTGGGAACTGTTACTGAGAACTGGGTGCTTTTTTTAGTACTTGCTTTTTTGTGGCTTCAGGTAAACCATGTAGGGACTAAAATATGAGGTGTAATCCTTGAAGAACGCTGCCTAGCCAGAAATAATTATCACTCTATGTGATGAATGAggcaacaagaaaaaaaaaggtggaaCACACTCCCTTTAGCAGGAGGGTGTCGCGGTAGTGGGAACCAAACAGGTACCTTGAAGTGAGTCAAATCCATGAGTGTAGGTACCATGTAGGTGCCATTGATTAGGGAAAAGTGCCATATAAAGCTTTAGGTTGAGTAGTTTACCCAGGTAAATAATAAGCAGTTTATGACATATTTCTAATTGAAGACAGAAAAgataaaaaggcttttttttacactttaagaTAAGAGCTCAATTGACAacaaattaaaaagataaagaaataaaccacAGGGGCCTCAATACTTATTAGAAGACTCTTTATTGTATGAACTTATTCtattaaataatattgaatGAATGACAACAATGAAGCTGGTGGAAATTTCCGTTTGGCATGTAGCAGTTGCTCTTATGTAACCATGACTCAGAGGTAGGCCATCGTTGTAGGAAGAGCTTTGCTCAAGGACTCCAACCTGGGCACTTTTCCAAGCAGAGTTTCCCAACTTCTACCTCCAGGAGAGCAGCAATGTCACCCTCTATGCCATATACATGTACGGCATGTACCTTGTAACATGTTAACCAATGGAATGAAATGTTGGAAgtaagaaaaacactttttctaacaaactgaatttaaaaaaaaaacgttcttgGTTGCATCAATGCTCACTGTCATTCACTTTTCCCTCCTGGAGTCAAAATGAGTCCTTTTTTAATACACGATAACGTTTACAATGGAgagaaataatgtaatataaacaagaaataaaacatctcAGTTCTGCAGTATCAGTACCTGCTTCTATATCTCTTATACATGCATTCCCAGAGGTCACTGTGGAGTCATATGCACCAAATAACCGGCAATATTCCTGAAATTGTTccctttaacaaaaaataaaaataaaaaaagaactccCTTATAGCAGAAGCCAGCCATTGGAAAGCTGCATACTATATACACAGATCAGCCATATCATTAGCACTACATACCACCTACAACACAGCCCTACATTTGATGATGATATGTTGAACCAATACACTAGTTAGCAGCAGATGCTTCAAGTTCtgtaatgccaggttcacactacacaatttaaatgtttttatttttcagtcacTGACAATTTTTCTCCAATTTTACTCCAATTGGGGATCTCTTAAAATACGTTTGCCGATCGGTAGACGAGTGATCGCCGGCAAGTCGCAGATGCctggcaaatatttggcatgctaaATATCTGATCCAGTCGGCGACTGAGAGACAGGAGCAGTGGCTACCTACAGCCATCTCCTGCAtgaccagagctgtttatagagGGCCTGACTacagtttagattctctgcccgaacctgaCCCAACCAGAGGCCCAGGTCAGGTTGGGCTCAGGAAAATAGTCTGTGACCTAGGCATCTGTATTTAATGCtcgatttattttatataaagctatggcatgataatcacaatatagcaaagtaataaatcgaactgtttttaaataaaagttgcacaagttagaatgttataattatGCAGCTCTGGGGCTCACGCACACCTGAGCTTCTTCTTTGCTTGTCCACTATTGATTGCAGCACTGTACGTTGCTTTCCCTAAaaaataggtctatgcttcttcagtgttgcaatgttaattaacataattctgaacaaATTTCGCTCATTGaaacagcccgaaaatgttttttaaaagctctgttttaaactctacttattaaaaaaatgtctgctTTAAACGATTATGTAACATCATGTCTCCGGTAATGAAACATATGATATAGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241591.3 True 4459 mRNA 0.43 4 9873966 9882127

Neighbor

gene id symbol gene type direction distance location
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding upstream 36711 9830103 ~ 9837255 (+)
LOC111194519 NA coding upstream 54796 9809326 ~ 9819170 (+)
LOC103028184 LOC108427103 coding upstream 289957 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 514009 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 619849 9234681 ~ 9254117 (+)
LOC111194523 NA coding downstream 17201 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 34327 9916454 ~ 9917473 (+)
LOC103032638 LOC101168737 coding downstream 160599 10042726 ~ 10049750 (+)
LOC111194527 NA coding downstream 169193 10051320 ~ 10054422 (+)
LOC103032326 NA coding downstream 251683 10133810 ~ 10140513 (+)
G150681 NA non-coding upstream 2350 9869699 ~ 9871616 (+)
G150673 LOC107552671 non-coding upstream 16811 9855134 ~ 9857155 (+)
G150671 NA non-coding upstream 53175 9820586 ~ 9820791 (+)
G150669 NA non-coding upstream 83371 9787468 ~ 9790595 (+)
G150663 NA non-coding upstream 108518 9765071 ~ 9765448 (+)
G150704 NA non-coding downstream 73339 9955466 ~ 10016966 (+)
G150705 NA non-coding downstream 108347 9990474 ~ 9998264 (+)
G150698 NA non-coding downstream 128123 10010250 ~ 10032076 (+)
G150709 LOC108427146 non-coding downstream 133084 10015211 ~ 10024979 (+)
G150725 NA non-coding downstream 212464 10094591 ~ 10096762 (+)
G150674 tpgs1 other upstream 21112 9851218 ~ 9852854 (+)
G150579 NA other upstream 306869 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1217258 8648830 ~ 8656708 (+)
G150131 NA other upstream 1994665 7874640 ~ 7879301 (+)
G150099 NA other upstream 2068712 7769684 ~ 7805254 (+)
LOC103031168 NA other downstream 259997 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 309393 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 438142 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 527666 10409793 ~ 10442243 (+)
mau2 mau2,LOC106573592 other downstream 740532 10622659 ~ 10635541 (+)

Expression


Co-expression Network