LOC103040403 (dad1,LOC103040403,LOC107713681,LOC107558269)


Basic Information

Item Value
gene id LOC103040403
gene name dad1,LOC103040403,LOC107713681,LOC107558269
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10382880 ~ 10386158 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242241.3
gatttgattttagaGGAGGTCGGAACTACAGTGTGAGGAGTGCAGTGTTTCAGTGGGGACTCTTTATAGGGAGACGCTCTTCTGCAGCTACACGTCATTGATTAGAGTGTGTGGATCTGCGGGTTttattcagtactttattattatatatcctgTATTATAAATCAGCAGCGGGATGTCTGACTCCGTGTTCTCCGTGCTCACTCGTTTTGTGGAGGAGTACAGGAACAGAACCTCCAGCAAGCTGAAGGTGATAGACGCCTATCTGCTGTATATTTTACTGACTGGAGCTTTCCAGTTCCTCTACTGTTTACTGGTGGGAACTTTCCCCTTCAACAGCTTTCTGTCCGGATTCATCTCCTCTGTGGGATCCTTCATCCTCGCTgTGTGTCTGCGTATCCAGATCAACCCTCAGAATAAAGGAGAGTTCCTGTCCGTCTCACCGGAGAGGGCCTTCGCAGACTTCCTCTTCGCCCATACTGTTCTCCACCTGGTGGTGGTTAATTTCATTGGATGAGTGAAGACCCTGTTCTCAGCTGGTGCTACTTTCTGCAGGCATGGAGACGTGGTGTTAATGCCTTCCTGACCAACACCTGACAGTGAACTTCAATCAGTGCCGTTAAAATAGagatttgtttaatgtttaatataatttgTCAATATGTCAATATTAGAACAGCTGTTTGTTCATCTCAACAAAACACTTTTCTACTTTTCTAAAGTTCTTCAGTTACTGAAACACAAATAAAGTGACTAAGAATGATTAATTA

Function

symbol description
dad1 Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human DAD1 (defender against cell death 1).

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242241.3 True 770 mRNA 0.43 3 10382880 10386158

Neighbor

gene id symbol gene type direction distance location
LOC103032326 NA coding upstream 242367 10133810 ~ 10140513 (+)
LOC111194527 NA coding upstream 328458 10051320 ~ 10054422 (+)
LOC103032638 LOC101168737 coding upstream 333130 10042726 ~ 10049750 (+)
LOC111194523 NA coding upstream 456066 9899328 ~ 9926814 (+)
LOC111194611 NA coding upstream 465407 9916454 ~ 9917473 (+)
LOC111194532 NA coding downstream 4321 10390479 ~ 10407671 (+)
LOC111194617 NA coding downstream 54565 10440723 ~ 10452490 (+)
LOC103024215 NA coding downstream 56832 10442990 ~ 10443712 (+)
LOC103021908 tpm4b,tpm4,LOC108427191,LOC107696831,LOC105022485,LOC108280645 coding downstream 171956 10558114 ~ 10583740 (+)
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding downstream 199601 10585759 ~ 10593172 (+)
G150757 NA non-coding upstream 75475 10301373 ~ 10307405 (+)
G150752 NA non-coding upstream 101665 10280470 ~ 10281215 (+)
G150735 NA non-coding upstream 204403 10168326 ~ 10178477 (+)
G150733 NA non-coding upstream 263111 10119321 ~ 10119769 (+)
G150725 NA non-coding upstream 286118 10094591 ~ 10096762 (+)
G150883 NA non-coding downstream 125930 10512088 ~ 10518923 (+)
G150902 LOC108427200 non-coding downstream 334344 10720502 ~ 10724360 (+)
G150938 NA non-coding downstream 407390 10793548 ~ 10804059 (+)
G150953 NA non-coding downstream 553825 10939983 ~ 10942003 (+)
G150976 NA non-coding downstream 630595 11016753 ~ 11017418 (+)
LOC103040721 LOC108427133,LOC108280800 other upstream 19505 10320269 ~ 10363375 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other upstream 103050 10191520 ~ 10279830 (+)
LOC103031168 NA other upstream 230163 10142124 ~ 10152717 (+)
G150674 tpgs1 other upstream 530026 9851218 ~ 9852854 (+)
G150579 NA other upstream 815783 9555659 ~ 9567097 (+)
LOC111194616 NA other downstream 23635 10409793 ~ 10442243 (+)
mau2 mau2,LOC106573592 other downstream 236501 10622659 ~ 10635541 (+)
G150935 NA other downstream 354575 10740733 ~ 10741138 (+)
LOC103037335 LOC108280688,LOC108427207 other downstream 892207 11278365 ~ 11531411 (+)
LOC111194536 NA other downstream 1145411 11531569 ~ 11539837 (+)

Expression


Co-expression Network