mmp28 (mmp28)


Basic Information

Item Value
gene id mmp28
gene name mmp28
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5273915 ~ 5304919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258383.3
GAACAGCCCGCTCACTGCAGGTCAGCCCGGCTGCAGCATGAAGAAGCTGGATCTGGATGATCAGTCCTCTCCTCCTCTGGTGTTTAATGGAAGTCTGTTGGAGTGAAGCCTCCAGCTGTCAGGAGAAGCTGCAGGTCTGTGATGGCTGCTGTCAGGATCCTCTGCTCTCTGGTGGGGCTGGTGGTCTCGGCTGGGGGCTCTCCTCTCAGAGAGCAGGACCTTCAGCCGGTGGAGGGGTTTCTGGAGAAGTATGGCTACCTTCATGAAGAGGATCATATGCACAGTGCCAATGAAGTCAAGACAGCCGTCAGGGAATTTCAGTGGCTGTCCCATCTGCCAGTCACTGGACAGGTGGACAGTGCCACCCTGGTGAAGATGGCCTCACCACGCTGCGGAGTAAAGGACAGGGGAACTCATGAAGCCTGGGCACAAAGGGTCAACTCCGTTTTCACAGGCCAAAGCCATAAGCAGCACCTCCGCAAGAAGCGTTACACTCGACCAGGAGAGAAGTGGTACAAGCGACACTTGACTTACCGCATCGTGAACTGGCCCCGGCACCTCTCGCAGGGTCCCGTACGGCTGGCTGTTCAGACAGCCTTCCAGCTTTGGAGCAACGTGTCCGGACTGGTCTTCCAGGAGGTCAGCCAGGGTCCCACAGACATCAGACTGGCTTTTTATGAGGGAGAGCACAATGATGGAACAAGCAATGCATTTGATGGCCCAGGCGGAGCCCTGGCCCATGCTTTTTTCCCATGCCGGGGCGAGGCTCACTTTGACAAGGCGGAGCGCTGGACCCTGAATGGCCACAAAGGACATAACCTTTTCCTGGTCACCGCCCACGAGATCGGCCACACGCTGGGATTGGAGCACTCACCTGTCCGTCATGCTCTTATGTCACCCTACTACAAGAAGCTGGGGCGCAATCTACTGCTTAGCTGGGACGACATTACAGCTGTGCAACAGTTATATGgtaagCCATCTGGAGGTGCAGTGGTCCAGTTGCCAGGCCAGGTTCTAAGCTGGGCCATGCAGGACTGGGAACTTGCTGAGGAACCTAAAAGCATGTCTGCTCAGCCACACTATTGCCAGGGCCTGTTTGATGCCATCACAATGGATGGGAATGGAACAGTGCTCATCTTCAGAGGTGGATTGTTTTGGACGGTGTCATCTGAGGGGAACGTAAGCTCTCCACTTCCTCTCCAGCAGCACTGGCCTCATCTACCATTCACCATCGACGCTGCTGCCTTCTCCCCTTTGGATGGAAAGCTGTACTTTTTCAAAGGTAAGCGAATGTGGCGGTACTCCGGCCCTGACCTGGACCCAGGCTTCCCCAGGAAAAGCAGCGAGTCTGGCCTCCCTCGCCACCCAGACTGTGCCCTCTACTACAGACCTCTGGGCCGCATGGTTCTCTTTAAAGGCTCACGTTACTTTGTGCTGAATCTGAAGACTCTTCGATCTGAGCCCTATTACCCCCGCAGCCTGGCAGACTGGAAGGGGCTGCCTAAAGGGGCTAACGGGGCGCTGACCAGGCCAGACGGACATATTTATTTCTTCAGAGAGCAGAAGTACTGGAGGTTCGACCCTGGAAAAGTGAGGGTCACTGGGACCGGACAGTGGGCAGAGACACTGGAGTGGACCGGCTGCCACAGAACTGCTTTAGAACAGACTAATGACACACTGTGACCTGTAGAGGGAGCCTGTGAGGAGAGACTTGAGGGGTGGGATTAGAACCAGCACaatgacagaaaataaaattaaaattaaaaagatatTAATCTAAGCTGATTTAAAATGtggttaaataattaatttaaatatttttttggtgaattttgtttaaaacaaacaaagaaaaaaactttgcattaaaaaaactaaactaactttGTTTTCTTGTGCAGAAATGGAAAATGGTTCAGGTTCAGGGCAAAAAAACATGTCGAGCTTCTCTAATAATCTCAAACCACATGGTTCTGAGGTCTCCAGGCAATCCTGGGCAGgaattttactttctggacctgaatCTTCTGCCTGTGTTTAACTGTTTCTAATCTGTGACTGAGAAAAGAGGGCCATGTGCAattcaataaaaacaatgaGTGTGGCAA

Function

symbol description
mmp28 Predicted to enable metalloendopeptidase activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human MMP28 (matrix metallopeptidase 28).

NR:

description
matrix metalloproteinase-28-like

GO: NA

KEGG:

id description
K08006 MMP28; matrix metalloproteinase-28 (epilysin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258383.3 True 2108 mRNA 0.51 8 5273915 5304919

Neighbor

gene id symbol gene type direction distance location
LOC111194496 taf15,LOC107103138 coding upstream 813 5262341 ~ 5273102 (+)
LOC111194493 NA coding upstream 52781 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 56829 5215285 ~ 5217086 (+)
LOC103032228 NA coding upstream 62140 5210309 ~ 5211775 (+)
LOC111194492 NA coding upstream 66856 5204293 ~ 5207059 (+)
LOC103043150 LOC108424020,LOC108280635 coding downstream 28952 5333871 ~ 5344070 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 386916 5691835 ~ 5912829 (+)
mlf1 NA coding downstream 610680 5915599 ~ 5932823 (+)
gfm1 gfm1 coding downstream 630269 5935188 ~ 5949403 (+)
LOC111194497 NA coding downstream 659857 5964776 ~ 5965375 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 47575 5223649 ~ 5226340 (+)
G149574 NA non-coding upstream 236121 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 339681 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 341078 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 364084 4907417 ~ 4909831 (+)
G149635 NA non-coding downstream 39925 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 68090 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 120973 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 482006 5786925 ~ 5816467 (+)
G149760 NA non-coding downstream 644932 5949851 ~ 5950341 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 15054 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 73930 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 159199 5111324 ~ 5114716 (+)
G149595 NA other upstream 171557 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 509070 4684608 ~ 4764845 (+)
G149754 NA other downstream 420350 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1278127 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1630422 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1944246 7249165 ~ 7251366 (+)
G150099 NA other downstream 2464765 7769684 ~ 7805254 (+)

Expression


Co-expression Network