smc4 (smc4,LOC107720450,LOC107570344)


Basic Information

Item Value
gene id smc4
gene name smc4,LOC107720450,LOC107570344
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6699726 ~ 6725345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258396.3
aaagACGGTATTAGCTGTACAGCTGAACATCTGAACACGACAATTGGCACAGTCCGCACTTTTCTGTTTGAATTTGGGCACTGAAGTCGGCGCAGGCTCCCATGATGCCTTGCGCGGGTTTGTAACGAATTTAGGCGCCATTTTCAAGTTGGATTTTCCTCATCACAGCGAAAATAAACGGGCTCGGATTtatgctatttttatatttaaaaattacaaacgCGTTTTTAGGGAGTCGACACGTTTGGGTTACATAGGAGAGCGTTTTCAAACCTGAGAGATTTTAGCCAATCATGCCAGGAAAAACGACCAAGTCCTCCACTGCTGCTAAACGAGGAAAAGGGTCTAAGGATGACTCTGACGAGGAGATACACCAAGCCCCCACTAAAGAAGCTCGCTCGGGTGACCAAGACCTGCCACCAGCACCCAACACTAATGATGCAGCTCCCGGGGAGCCTGCCGAGGCAGTGGTGGATAATCGAAGTTTGGAGGAGATCCTCGGTAGCATCCCTCCACCCCCGCCCCCAGCGATGACCAATGAACCGGGCGCTCCTCGTCTGATGATCACTCACATCGTCAATCGCAATTTTAAATCATACGCTGGGGAGCAGATTCTGGGACCTTTCCACAAGCGGTTTTCCTGTATTATTGGTCCAAACGGCAGTGGAAAGTCCAATGTGATCGACTCCATGCTCTTTGTGTTTGGATACAGAGCTCAAAAAATCCGATCCAAAAAGCTGTCTGTCCTTATTCACAGTTCTGATGAGCACAAGGACATTCAGAGCTGCACTGTAGAGGTGCACTTCCAGAAGATTGTTGataagGAAGGAGATGACTACGATGTCATCCCCAACAGCAAGTTCCATGTTTCAAGAACAGCCGGTAAAGATAATTCCTCAGCCTACCACATCAATGGCAAAAAGGCCACTTTTAAAGATGTTGGGACAGTGCTTCGTAGCCATGGCATTGACCTTGACCACAACAGATTTCTTATTCTAcagGGGGAAGTGGAGCAGATTGCTATGATGAAGCCTAAAGGCCAGACAGAGCATGACGAAGGTATGCTGGAATACCTTGAGGACATTATTGGCTCCTGCCGACTCAAAGAGCCTATCAACACTTTGTGCAGACGAGTGGAGCTACTCAATGAACAGAGAGGAGAAAAGCTGAATCGTGTGAAGATGGTGGAGAAGGATAAAAATGCCCTGGAGGGTGAGAAGAACAAAGCGGTAGAGTTTCTCACTTTGGAAAATGACATGTTCAAGAAGAGGAGCCAACTCTGCCAGTTCTATGTGCATGATTTGCAGCAGCGTGTGGCTGAAAAGGAAGCAGAGAAACAGCAGATCCAGGAGGACACCAAGGGACTGACTGAAAAAAGCAACCAGCTCACAGAGGAAATGAAGGGGAAGAACGAGGCCCTGAAGAATGTGGAGAAGAAATTGGGCAAGCTGACTAAGTTCATTGAGAACCAGAAGGAGAAATTCACCCAGCTGGACCTCCAGGATGTAGAGGTGCGCGAGAAGCTCAAACACACCAAGACCAAAACCAAGAAACTTCACAAACAGCTGCAGAAGGACAAGGAGAAGttggAAGAGGTGAGAAATGTCCCTGCCAGCAGTGAGAAGATCATTACAGAAGCCTCTGCCCAAAAGGAAGAGTTGGAGAAGCAGAAAGTGAAGGAAGAGGAGTCCCTGGCCCAAGTGATGGAGAGTCTTAAGGAGGAGACCAGCGGCCTGCAGAATGAGAAAGAGcaAAAAGAGAAGGAGCTCCTGGAGCTGAGTAAGGCAGTGAATGAGACACGCTCACAGATGGATGTAGCTCAGTCAGAGTTGGACATCTACCTTAGCCAACACAACACAGCAGTTTCACAGCTCAACCAAGCGAAAGAGACCTTGCAGGGCACTGCTGACACACTTCGTGAGAGAAGAGCTGCCATCAAAGACTTGCAGGTCAAAATACCAAAGTGTGAGCAGGAGCTTAAGAAGGATGAACAGGAGCTGGAACAGATCTCTGGGCAGGATGGGGAGGCCAGGGGAGTGGTAAGTGACCTGAGGCAGAAGGTTGAAGAGGCAAAAAGCTCTTTGTCCTCCAACCGCAGCAGAGGAAAAGTGCTGGATGCCCTCATGCAGCAAAAACAGAGTGGCAAGATCCCTGGCATCTTTGGACGCCTGGGTGACTTGGGGGCCATTGATGAGAGGTATGATGTTGCCATTTCTTCAAGCTGTGGCTCGCTTGATAACATCTTGGTGGACACCATCGACACAGCCCAGAAATGCGTTGTTTTCCTCAAGTCTCAGAATATCGGAGTGGCCACTTTTATTGGTCTAGATAAGatgaaggtttgggaaaaaaatatggttgcCATTTCCACACCTGAGAACATTCCCCGGTTGTTTGACATGGTGAAGGTGAAGGATGAATCCGTCCGACCTGCGTTCTACTTTGCCCTGAGAGACACGCTTGTTGCTAAAGATCTGGAGCAAGCCACTAGAGTGGCCTTCCAGAAAGATAAACGCTGGAGAGTGGTTACTTTGCAGGGACAGATCATCGAACAGTCTGGCACCAtgactggaggaggaggacgtgTAATGAAAGGCAGAATGGGCTCCTCTATTGGCACCGAAGTAACACAGGAACAGCTGGACCGTATGGAGAGtgcactgaatgagaaggtggtGCAGCTGCAGGGCTGGCAGCAGAGGAAACAGCAGCTCGAGGAGAAGGTGCACAAACAAAGACGGGAGCTCAGAGACATGAAGAACACATTGGAGAAATACACAGCCAGCATTCAGAGTCTTGAAGAGCAAGAGATGCTCATGAAGTCTCAGATGAAAGGGTTGGAAGCAAATGTTCTCGCTGCTGCCCCAGACAAGGCTAAGCAAAAACAAATGGAGAAGAGCCTGGATGCCTTCAAGAAAAACTTTGAGGCTGCCTCCAACAAGGCAGGAAAGGTCGAGGCTGAGGTAAAGCGACTTCACACCCTGATTGTGGATATAAACAGCCACAAACTGAAGGCCCAGCAGGACAAACTAGATAAGGTCAACAAAGAACTGGACGAATGTTCCTCAGCTATTACTAAAGCCCAAGTGGCTATCAAGACCGCAGGAAGAAACCTAAAGAAGTCTGAGGAAATAGTTGAACGTCTAGAAACAGAGACTAAAGAGAATGAGAAGCTCATGGAGGAGCTAATGGAGCAGTTAAAGAAACTGGAGGAACAAGCAGGAGAGATCATGAAGACTTGCCAAGATGCTGAGGAGGCACTGCCTGAAGTGCAGGAAGAGCATCGTGGAGTGCTACAAGAGATTAAGGCTGTTCAGGAAAAAGAGCATGCTCTGCAGAAAGAATCCTTGAACATCCGGCTGAAAGTTGAGCAGATCGACACAGCTATTTCTGAGTGCCAGAGTAAGAGCAAGCACTGGGATAAAGAGGCCACAAAGATCGTTCTGCATTCTATTGATGATAAACCAGCAGAGGAACTGCCTAAGCTGACCCCAGAGGATTTGGCGGCCATTAAGAACCCAGATGTTATTAAAAATGAGATTGCTCTGCTGGAAGACCGCTGTGCCCGGATGAAGCCCAACTTGGGAGCTATAGCAGAGTTTAAAAAGAAGgAGGAGCTGTATTTGCAGAGAGTAGCTGAACTGGATGAGATCACAACCCAGAGAGATGATTTCAAGCGAGGGTGTGAAGATTTGCGGAAGCAGAGACTGAACGAGTTCATGGCTGGCTTCAACATTATCACCAACAAGCTGAAAGAGAACTACCAGATGTTGACACTAGGGGGTGATGCAGAGCTGGAGCTGGTGGACAGCCTGGACCCGTTTTCTGAGGGCATCATGTTTAGTGTGCGTCCTCCTAAAAAGAGCTGGAAGAAGATCTATAACTTGTCTGGAGGAGAGAAAACTCTGAGCTCTCTGGCTTTGGTTTTTGCTCTGCATCACTTTAAGCCCACACCTCTTTACTTCATGGACGAGATAGATGCTGCGCTGGACTTCAAGAACGTGTCCATTGTGGCCTGCTACATTTATGAGCAAACCAAGAATGCTCAATTCATCATTATTTCTCTGAGGAACAACATGTTTGAGATGGCTGACCGTCTGATCGGCATCTACAAGACACACAACACCACCAAGAATGTTGGCATCAACCCCAAAACCATTGTCCTCAAAGATGTTGAAGTTGCATGA
>XM_022678787.1
ATGCCAGGAAAAACGACCAAGTCCTCCACTGCTGCTAAACGAGGAAAAGGGTCTAAGGATGACTCTGACGAGGAGATACACCAAGCCCCCACTAAAGAAGCTCGCTCGGGTGACCAAGACCTGCCACCAGCACCCAACACTAATGATGCAGCTCCCGGGGAGCCTGCCGAGGCAGTGGTGGATAATCGAAGTTTGGAGGAGATCCTCGGTAGCATCCCTCCACCCCCGCCCCCAGCGATGACCAATGAACCGGGCGCTCCTCGTCTGATGATCACTCACATCGTCAATCGCAATTTTAAATCATACGCTGGGGAGCAGATTCTGGGACCTTTCCACAAGCGGTTTTCCTGTATTATTGGTCCAAACGGCAGTGGAAAGTCCAATGTGATCGACTCCATGCTCTTTGTGTTTGGATACAGAGCTCAAAAAATCCGATCCAAAAAGCTGTCTGTCCTTATTCACAGTTCTGATGAGCACAAGGACATTCAGAGCTGCACTGTAGAGGTGCACTTCCAGAAGATTGTTGataagGAAGGAGATGACTACGATGTCATCCCCAACAGCAAGTTCCATGTTTCAAGAACAGCCGGTAAAGATAATTCCTCAGCCTACCACATCAATGGCAAAAAGGCCACTTTTAAAGATGTTGGGACAGTGCTTCGTAGCCATGGCATTGACCTTGACCACAACAGATTTCTTATTCTAcagGGGGAAGTGGAGCAGATTGCTATGATGAAGCCTAAAGGCCAGACAGAGCATGACGAAGGTATGCTGGAATACCTTGAGGACATTATTGGCTCCTGCCGACTCAAAGAGCCTATCAACACTTTGTGCAGACGAGTGGAGCTACTCAATGAACAGAGAGGAGAAAAGCTGAATCGTGTGAAGATGGTGGAGAAGGATAAAAATGCCCTGGAGGGTGAGAAGAACAAAGCGGTAGAGTTTCTCACTTTGGAAAATGACATGTTCAAGAAGAGGAGCCAACTCTGCCAGTTCTATGTGCATGATTTGCAGCAGCGTGTGGCTGAAAAGGAAGCAGAGAAACAGCAGATCCAGGAGGACACCAAGGGACTGACTGAAAAAAGCAACCAGCTCACAGAGGAAATGAAGGGGAAGAACGAGGCCCTGAAGAATGTGGAGAAGAAATTGGGCAAGCTGACTAAGTTCATTGAGAACCAGAAGGAGAAATTCACCCAGCTGGACCTCCAGGATGTAGAGGTGCGCGAGAAGCTCAAACACACCAAGACCAAAACCAAGAAACTTCACAAACAGCTGCAGAAGGACAAGGAGAAGttggAAGAGGTGAGAAATGTCCCTGCCAGCAGTGAGAAGATCATTACAGAAGCCTCTGCCCAAAAGGAAGAGTTGGAGAAGCAGAAAGTGAAGGAAGAGGAGTCCCTGGCCCAAGTGATGGAGAGTCTTAAGGAGGAGACCAGCGGCCTGCAGAATGAGAAAGAGcaAAAAGAGAAGGAGCTCCTGGAGCTGAGTAAGGCAGTGAATGAGACACGCTCACAGATGGATGTAGCTCAGTCAGAGTTGGACATCTACCTTAGCCAACACAACACAGCAGTTTCACAGCTCAACCAAGCGAAAGAGACCTTGCAGGGCACTGCTGACACACTTCGTGAGAGAAGAGCTGCCATCAAAGACTTGCAGGTCAAAATACCAAAGTGTGAGCAGGAGCTTAAGAAGGATGAACAGGAGCTGGAACAGATCTCTGGGCAGGATGGGGAGGCCAGGGGAGTGGTAAGTGACCTGAGGCAGAAGGTTGAAGAGGCAAAAAGCTCTTTGTCCTCCAACCGCAGCAGAGGAAAAGTGCTGGATGCCCTCATGCAGCAAAAACAGAGTGGCAAGATCCCTGGCATCTTTGGACGCCTGGGTGACTTGGGGGCCATTGATGAGAGGTATGATGTTGCCATTTCTTCAAGCTGTGGCTCGCTTGATAACATCTTGGTGGACACCATCGACACAGCCCAGAAATGCGTTGTTTTCCTCAAGTCTCAGAATATCGGAGTGGCCACTTTTATTGGTCTAGATAAGatgaaggtttgggaaaaaaatatggttgcCATTTCCACACCTGAGAACATTCCCCGGTTGTTTGACATGGTGAAGGTGAAGGATGAATCCGTCCGACCTGCGTTCTACTTTGCCCTGAGAGACACGCTTGTTGCTAAAGATCTGGAGCAAGCCACTAGAGTGGCCTTCCAGAAAGATAAACGCTGGAGAGTGGTTACTTTGCAGGGACAGATCATCGAACAGTCTGGCACCAtgactggaggaggaggacgtgTAATGAAAGGCAGAATGGGCTCCTCTATTGGCACCGAAGTAACACAGGAACAGCTGGACCGTATGGAGAGtgcactgaatgagaaggtggtGCAGCTGCAGGGCTGGCAGCAGAGGAAACAGCAGCTCGAGGAGAAGGTGCACAAACAAAGACGGGAGCTCAGAGACATGAAGAACACATTGGAGAAATACACAGCCAGCATTCAGAGTCTTGAAGAGCAAGAGATGCTCATGAAGTCTCAGATGAAAGGGTTGGAAGCAAATGTTCTCGCTGCTGCCCCAGACAAGGCTAAGCAAAAACAAATGGAGAAGAGCCTGGATGCCTTCAAGAAAAACTTTGAGGCTGCCTCCAACAAGGCAGGAAAGGTCGAGGCTGAGGTAAAGCGACTTCACACCCTGATTGTGGATATAAACAGCCACAAACTGAAGGCCCAGCAGGACAAACTAGATAAGGTCAACAAAGAACTGGACGAATGTTCCTCAGCTATTACTAAAGCCCAAGTGGCTATCAAGACCGCAGGAAGAAACCTAAAGAAGTCTGAGGAAATAGTTGAACGTCTAGAAACAGAGACTAAAGAGAATGAGAAGCTCATGGAGGAGCTAATGGAGCAGTTAAAGAAACTGGAGGAACAAGCAGGAGAGATCATGAAGACTTGCCAAGATGCTGAGGAGGCACTGCCTGAAGTGCAGGAAGAGCATCGTGGAGTGCTACAAGAGATTAAGGCTGTTCAGGAAAAAGAGCATGCTCTGCAGAAAGAATCCTTGAACATCCGGCTGAAAGTTGAGCAGATCGACACAGCTATTTCTGAGTGCCAGAGTAAGAGCAAGCACTGGGATAAAGAGGCCACAAAGATCGTTCTGCATTCTATTGATGATAAACCAGCAGAGGAACTGCCTAAGCTGACCCCAGAGGATTTGGCGGCCATTAAGAACCCAGATGTTATTAAAAATGAGATTGCTCTGCTGGAAGACCGCTGTGCCCGGATGAAGCCCAACTTGGGAGCTATAGCAGAGTTTAAAAAGAAGgAGGAGCTGTATTTGCAGAGAGTAGCTGAACTGGATGAGATCACAACCCAGAGAGATGATTTCAAGCGAGGGTGTGAAGATTTGCGGAAGCAGAGACTGAACGAGTTCATGGCTGGCTTCAACATTATCACCAACAAGCTGAAAGAGAACTACCAGATGTTGACACTAGGGGGTGATGCAGAGCTGGAGCTGGTGGACAGCCTGGACCCGTTTTCTGAGGGCATCATGTTTAGTGTGCGTCCTCCTAAAAAGAGCTGGAAGAAGATCTATAACTTGTCTGGAGGAGAGAAAACTCTGAGCTCTCTGGCTTTGGTTTTTGCTCTGCATCACTTTAAGCCCACACCTCTTTACTTCATGGACGAGATAGATGCTGCGCTGGACTTCAAGAACGTGTCCATTGTGGCCTGCTACATTTATGAGCAAACCAAGAATGCTCAATTCATCATTATTTCTCTGAGGAACAACATGTTTGAGATGGCTGACCGTCTGATCGGCATCTACAAGACACACAACACCACCAAGAATGTTGGCATCAACCCCAAAACCATTGTCCTCAAAGATGTTGAAGTTGCATGAGGATAAAATAAGTATTGTCATAACATCAATGTGTTTCATATTcatctgtcttcttttttcccATGAATTTAATTACACATACTTGCACTGTTTTTACTATTCTTTTTCCTGTGTAATTTTAAACCTATTTCCTCTTTTACTGTCCTtcttaaataagctgctgtttatacaattaaagtttatataaagatgtacaa

Function

symbol description
smc4 Predicted to enable ATP binding activity. Predicted to be involved in mitotic chromosome condensation. Predicted to act upstream of or within chromosome organization. Predicted to be located in chromosome and nucleus. Is expressed in several structures, including digestive system; nervous system; optic cup; otic vesicle; and pectoral fin. Orthologous to human SMC4 (structural maintenance of chromosomes 4).

NR:

description
structural maintenance of chromosomes protein 4-like isoform X1

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0051276 chromosome organization biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06675 SMC4; structural maintenance of chromosome 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258396.3 True 4187 mRNA 0.48 24 6699726 6725148
XM_022678787.1 False 4091 mRNA 0.47 23 6702236 6725345

Neighbor

gene id symbol gene type direction distance location
trnat-agu_9 NA coding upstream 150501 6549152 ~ 6549225 (+)
trnat-agu_8 NA coding upstream 150897 6548756 ~ 6548829 (+)
trnat-agu_7 NA coding upstream 151979 6547674 ~ 6547747 (+)
trnat-agu_6 NA coding upstream 152299 6547354 ~ 6547427 (+)
trnat-agu_5 NA coding upstream 152706 6546947 ~ 6547020 (+)
trnat-agu_10 NA coding downstream 9750 6735095 ~ 6735168 (+)
trnat-agu_11 NA coding downstream 12616 6737961 ~ 6738034 (+)
nmd3 nmd3 coding downstream 168983 6894328 ~ 6905641 (+)
LOC111194502 NA coding downstream 209785 6935130 ~ 6938983 (+)
LOC111194503 NA coding downstream 213714 6939059 ~ 6941197 (+)
G149800 NA non-coding upstream 234846 6463101 ~ 6464880 (+)
LOC111194498 NA non-coding upstream 725874 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 733295 5966160 ~ 5966431 (+)
G149766 NA non-coding upstream 739786 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 749385 5949851 ~ 5950341 (+)
G149934 NA non-coding downstream 16181 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 27673 6753018 ~ 6763106 (+)
G149944 NA non-coding downstream 44619 6769964 ~ 6827772 (+)
G149952 NA non-coding downstream 79134 6804479 ~ 6807042 (+)
G149960 NA non-coding downstream 167971 6893316 ~ 6893651 (+)
c17h3orf80 NA other upstream 113357 6583046 ~ 6586369 (+)
G149754 NA other upstream 972306 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1440865 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1499741 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1585010 5111324 ~ 5114716 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 209996 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 523820 7249165 ~ 7251366 (+)
G150099 NA other downstream 1044339 7769684 ~ 7805254 (+)
G150131 NA other downstream 1149295 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1923485 8648830 ~ 8656708 (+)

Expression


Co-expression Network