nmd3 (nmd3)


Basic Information

Item Value
gene id nmd3
gene name nmd3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6894328 ~ 6905641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258400.3
GTCATGATTATAACTATGATTATATACGCGCAGACATGGTTAGTTGATTTTAATCAGGCGCATTccgggctgctgctgctggggtcCTTTACCCTGGCACTCGGCTGTAACGTCACCAGCTGGAGGAGCACGTGCGGGTGGAGGCGCTGCTTTTCTCTGaTCATGGAGTACATGCAAGCCCCAGCCACAAGCAGCCATGGGAACATCCTTTGCTGCACCTGTGGAGTGCCCATTCCTCCAAATCCAGCCAACATGTGCGTCTCTTGCTTGAGAACCCAGGTGGACATCTCTGAGGGAATTCCAAAACAAGTCTCTGTACATTTCTGCAAGCAGTGTGAAAGGTACCTGCAGCCCCCAGGCACATGGATGCAGTGTGCCCTCGAGTCCAGGGAGCTGCTCGCTCTCTGTCTGAAGAAACTGAAGAGCTCAATGACAAAGGTCCGGCTCATTGATGCTGGGTTCTTATGGACGGAACCACACTCAAAAAGAATCAAGTTGAAGCTGACCATTCAGAAGGAGGTCATGAATGGAGCCATCTTACAGCAGGTGTTTGTGGTGGAGTTTGTCATACAGGCACAGATGTGCGATGACTGCCATCGAGTTGAAGCCAAAGACTATTGGAAGGCAGTTGTGCAAGTGAGACAGAAGactgTTCACAAGaagactttttattatttggagCAGCTGATTCTGAAACACAAGGTGCACCAGAACACACTTCGCATCAAGGAGATTCATGAGGGCATTGATTTTTACTACAGTTCCAAGCAGCATGCCCAGAAGATGGTGGATTTTCTACAGTGCACAGTGCCCTGCAGATCAAAGGCTTCCCAGCGCCTCATCTCTCACGACGTGCACTCCAATACCTACAACTACAAAAGCACCTTCTCGGTGGAGATTGTGCCCATCTGTAAGGACAACGTAGTGTGCATGTCACCTCGTCTGGCCCAGAGTCTCGGGAACATGGGTCAGGTTTGCGTGTGCATCCAGGTGACCAGCACGGTCCACCTTATCGACCCAAAAACCCTGCAGATTGCAGAAGTGGATGCCAACACTTACTGGCGCTACCCTTTCAACAGCTTATGTAGTCCGAAGCAGCTGGAGGAGTTTATCGTCATGGATATCGACATCATCAGGGACCAGAAACTGGGAGCAGGAGCCGGTCTGAGATCCAATAGAcacacATTGGCTGAGGTGTGGGTTCAGAAGACCTCGGAGATGAACACCAGTCAGCAGTATCACTGTCGCACCTtcttgggacacctgctcaacATCGGTGACCTGGTGATGGGCTATGACTTTGCCAACGCTAACTTCAACGACGAGTATCTGAACAAGATGAATCCGCATCACGTTCCTGATGTGGTTCTGATTAAGAAGTGCTACGACAGGGCAAGGAGGATAAAGCGCAGGAACTGGAAGCTGAAGGAACTGGACAGGGATAGAGAAGGCATGGACTCAGATGAtgagagGCAATACCAAGACTTCTTGGAGGACCTTGAGGAGGATGAGAACCTGAGAAAGAATGTCAACATCTTCAGAGATGCCTCCAAGATTCCTGTTGAGAGCGACACTGATGATGAGGGCGCTCCACGGATCTCTCTGGCTGAGATGCTTGAAGACCTGAGTCTCAATGATGCCACTGGAGGAGAGGGTGCAGACATGATGACCGATTAGATATCTGAGAGAAGAGAACACAGAGTGTCAAGAATATATGCAGGATTCACAAGATTTATCTCTGAAAGTAGCTTGATTAAGTGGGTTGAAACAATGAATTCCAGCCTAAGACTGGTCTGGCTGTTCCCATAAGGTTTGGCTTTACCCTGCTGTGAAAGATTTGATAATTAAGTAGCTGATAAATTGAATCATGTGTTCCTCAGGTGGTCTTCTTACTACAGACACTGTCTGTTTCACCTTTTGTATTACTATACAAAAACCTATAATAATCTAATGCTAtatattaaaatagcaattttaatTCAAGGTTATTCTTGTGAAAGTCTTGATTAAAGTGCTCAGAGTGGTGGTTGTGTGCTGTAATGATGTTAAGTGCTGCTTCAACTtaacaaataaatgaagaaaatcCTGA
>XM_015608157.2
GTCACCAGCTGGAGGAGCACGTGCGGGTGGAGGCGCTGCTTTTCTCTGaCACACAGTTACTGTCTTTATACTCTCTCCGGAACCCGGATACCGCGGAAATCATGGAGTACATGCAAGCCCCAGCCACAAGCAGCCATGGGAACATCCTTTGCTGCACCTGTGGAGTGCCCATTCCTCCAAATCCAGCCAACATGTGCGTCTCTTGCTTGAGAACCCAGGTGGACATCTCTGAGGGAATTCCAAAACAAGTCTCTGTACATTTCTGCAAGCAGTGTGAAAGGTACCTGCAGCCCCCAGGCACATGGATGCAGTGTGCCCTCGAGTCCAGGGAGCTGCTCGCTCTCTGTCTGAAGAAACTGAAGAGCTCAATGACAAAGGTCCGGCTCATTGATGCTGGGTTCTTATGGACGGAACCACACTCAAAAAGAATCAAGTTGAAGCTGACCATTCAGAAGGAGGTCATGAATGGAGCCATCTTACAGCAGGTGTTTGTGGTGGAGTTTGTCATACAGGCACAGATGTGCGATGACTGCCATCGAGTTGAAGCCAAAGACTATTGGAAGGCAGTTGTGCAAGTGAGACAGAAGactgTTCACAAGaagactttttattatttggagCAGCTGATTCTGAAACACAAGGTGCACCAGAACACACTTCGCATCAAGGAGATTCATGAGGGCATTGATTTTTACTACAGTTCCAAGCAGCATGCCCAGAAGATGGTGGATTTTCTACAGTGCACAGTGCCCTGCAGATCAAAGGCTTCCCAGCGCCTCATCTCTCACGACGTGCACTCCAATACCTACAACTACAAAAGCACCTTCTCGGTGGAGATTGTGCCCATCTGTAAGGACAACGTAGTGTGCATGTCACCTCGTCTGGCCCAGAGTCTCGGGAACATGGGTCAGGTTTGCGTGTGCATCCAGGTGACCAGCACGGTCCACCTTATCGACCCAAAAACCCTGCAGATTGCAGAAGTGGATGCCAACACTTACTGGCGCTACCCTTTCAACAGCTTATGTAGTCCGAAGCAGCTGGAGGAGTTTATCGTCATGGATATCGACATCATCAGGGACCAGAAACTGGGAGCAGGAGCCGGTCTGAGATCCAATAGAcacacATTGGCTGAGGTGTGGGTTCAGAAGACCTCGGAGATGAACACCAGTCAGCAGTATCACTGTCGCACCTtcttgggacacctgctcaacATCGGTGACCTGGTGATGGGCTATGACTTTGCCAACGCTAACTTCAACGACGAGTATCTGAACAAGATGAATCCGCATCACGTTCCTGATGTGGTTCTGATTAAGAAGTGCTACGACAGGGCAAGGAGGATAAAGCGCAGGAACTGGAAGCTGAAGGAACTGGACAGGGATAGAGAAGGCATGGACTCAGATGAtgagagGCAATACCAAGACTTCTTGGAGGACCTTGAGGAGGATGAGAACCTGAGAAAGAATGTCAACATCTTCAGAGATGCCTCCAAGATTCCTGTTGAGAGCGACACTGATGATGAGGGCGCTCCACGGATCTCTCTGGCTGAGATGCTTGAAGACCTGAGTCTCAATGATGCCACTGGAGGAGAGGGTGCAGACATGATGACCGATTAGATATCTGAGAGAAGAGAACACAGAGTGTCAAGAATATATGCAGGATTCACAAGATTTATCTCTGAAAGTAGCTTGATTAAGTGGGTTGAAACAATGAATTCCAGCCTAAGACTGGTCTGGCTGTTCCCATAAGGTTTGGCTTTACCCTGCTGTGAAAGATTTGATAATTAAGTAGCTGATAAATTGAATCATGTGTTCCTCAGGTGGTCTTCTTACTACAGACACTGTCTGTTTCACCTTTTGTATTACTATACAAAAACCTATAATAATCTAATGCTAtatattaaaatagcaattttaatTCAAGGTTATTCTTGTGAAAGTCTTGATTAAAGTGCTCAGAGTGGTGGTTGTGTGCTGTAATGATGTTAAGTGCTGCTTCAACTtaacaaataaatgaagaaaatcCTGA

Function

symbol description
nmd3 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosomal large subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and somite. Orthologous to human NMD3 (NMD3 ribosome export adaptor).

NR:

description
60S ribosomal export protein NMD3 isoform X2

GO: NA

KEGG:

id description
K07562 NMD3; 60S ribosomal export protein NMD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258400.3 True 2089 mRNA 0.47 16 6894328 6905641
XM_015608157.2 False 2028 mRNA 0.47 17 6894439 6905641

Neighbor

gene id symbol gene type direction distance location
trnat-agu_11 NA coding upstream 156294 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 159160 6735095 ~ 6735168 (+)
smc4 smc4,LOC107720450,LOC107570344 coding upstream 168983 6699726 ~ 6725345 (+)
trnat-agu_9 NA coding upstream 345103 6549152 ~ 6549225 (+)
trnat-agu_8 NA coding upstream 345499 6548756 ~ 6548829 (+)
LOC111194502 NA coding downstream 29489 6935130 ~ 6938983 (+)
LOC111194503 NA coding downstream 33418 6939059 ~ 6941197 (+)
LOC111194504 NA coding downstream 38848 6944489 ~ 6946968 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 611363 7517004 ~ 7540136 (+)
srprb srprb coding downstream 700848 7606489 ~ 7611611 (+)
G149960 NA non-coding upstream 677 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 66556 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 87286 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 131222 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 149303 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 347385 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 367564 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 468372 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 741982 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 748787 7654428 ~ 7659678 (+)
c17h3orf80 NA other upstream 307959 6583046 ~ 6586369 (+)
G149754 NA other upstream 1166908 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1635467 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1694343 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1779612 5111324 ~ 5114716 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 29700 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 343524 7249165 ~ 7251366 (+)
G150099 NA other downstream 864043 7769684 ~ 7805254 (+)
G150131 NA other downstream 968999 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1743189 8648830 ~ 8656708 (+)

Expression


Co-expression Network