CI01000012_07769675_07800004 (PDSS2)


Basic Information

Item Value
gene id CI01000012_07769675_07800004
gene name PDSS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7769200 ~ 7800241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07769675_07800004.mRNA
ACATAAATATGCCACACTAGTGTCAGGACTGCATAATGACGTAATTGCACCCAACATAAAACAAAAAAACAAATCACTGAATTGTTTTGTTCGAATGATCAAATGAACCAGTTCATTATAAATCAGACTTCCCCTATCAACATGCATTTATGTCTTCTAGCCGTCATGGGGCCAATTTATCAACACTTTATATGGATAAGAGTTAGTTCATGAATATTGATTAAGTCACCCTGACGTTGCTTGGTTACCTTATTGGAATGGTCTGCCATGTGACACAATTAATGTTAATGAACCAATAGTAGCATTGCTCAACTTAATTCCCAACCTGTGCCAATTTGCTATTGTATGCACTTCAGCCAATCAGTTGTGAGTATAACGTAACAGGGTTAATGTACATGAGCCAAGCCTCCAGTTTAGCAGGATTCGTAATTTCTTTCTGTTTGGCACAATGAACCGGCACTCATGAAAGACCATAATGTGTAAAGAAGCCCCTGATGTGCATTCAAGTGACAAACTGATTTACAGACTGGAGTATTACCTGAATATAGTGGTTAAAGATGCAGCATCAGTGCAGATTCAGCCGTCTCCTAAGACGCGCCAAAGATATTTATATGCACAATTGCAGGCTGGCGAGTCGGGCAATGCCAGCTCACGTTCCGCTTCGCCTTTCGGTTCATTCTTAAAAAAACACAGACCTCAGCGAAGTTCAGAGCAGTTTGCGGTTGCGGCAAGAGCTTGCGGAGATGTGGTATTCATGGCTATAATGAGAATAGAAATGGGGATTCACTTTATTGACTTATTTACACGGACAGTATTCAAGCTGCTCCTGGCTGCGGTTGTAGGAACAGGATATTTTGAGAGTCTTACTAGCAGAGGATTTGTGTTCGACAGCCGGAATAATCTACAGATGCGAGGTCTTGTGGTGCTGCTAATGTCCAAAGCAGCCGGTCCAAGTCCCAGTACCAGCGACCTTATTCATGACAGTATGGTCAGCGGCATCTACCCCAGTCAGCGGAACTTGGCTGAGATCACGGAGCTGATTCACACTGCCTTCCTGGTGCATCGTGGGATTGTTAATCTGAAGGAGTGGACGAACTCGGACGGCCCTCTCAAAGACATGCAGTTTGGGAACAAGATGGCTGTTCTGAGCGGTGATTTCCTGTTGGCGAATGCCTGCACTGGATTGGCCCAGCTCAATGACACCAAGGTGGTGGAGATGATCTCCAGTGCTATTGGAGATGTGGTGCAAGGAATCTATCACGAGAGTTCCAGTTCTGCAGAGGAGGGCTGTCTAACAATTGCTTCCTGGGAAGACCAAACATTCCTCTGCCATGGAGCTTTGCTTGCCAAGAGTTGTCAAGCAGCGATGAAGCTGGCCAGACACGGTACCGAGGCTCAGAATTTGGCTTTTCAGTACGGAAAACACCTCGCCCTCGGACACAAGCTAAACTCTGATCTACAGCCGTTCGTGAAGAGCGGGTCAGAGCCAGCTGTGTTTAGTTTGGATTTGGCTCCTGTTGTCTTCCACAGACAGATCATAGGACCTGAGAGATGGCGGCACCAGCTGAAACAGGCCCAGAATATGGCTAGACAGATTGATTACACAAAGCTCCGGGGCCTGATAAAGATGGAAAGAGGCATGAGCCAGGCGCTTGACCTGTGCAGTTACCATGGCAACAAGGCCTTAGAGGCCATGAAGTGCTTCCCACCCTCAGAGGCTCGGTCAGCGCTGGAAAACATGGCCTGTGCGGTTACCAAGTTCTAAAGATGTTTTCAATATAAATTTGATTCAGTTTGATGCAGCTGATTAATGCTGAAGCTGAGCCAACTGGTGTTTTTTTTTTTTTTTGGTGCTTTTTAAAGAGGACTTTCTTTGGGATGTTTGAGGTTCTGACCTGCTCTACAGATGATGATGATGATGATGATATGGAAATGACGAGTGTTGATTACTGGACTCGTACACACTATGCATTTGATTACCAAATCAGATTTATCTTTTAAA

Function

symbol description
pdss2 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process and ubiquinone biosynthetic process. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K12505 PDSS2; decaprenyl-diphosphate synthase subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07769675_07800004.mRNA True 2002 mRNA 0.45 10 7769200 7800241

Neighbor

gene id symbol gene type direction distance location
CI01000012_07678377_07700760 ROCK2A, ROCK2 coding upstream 67006 7678377 ~ 7702194 (+)
CI01000012_07645586_07647322 NA coding upstream 121238 7643680 ~ 7647962 (+)
CI01000012_07584742_07586196 KCNF1B, KCNF1 coding upstream 182828 7584742 ~ 7586372 (+)
CI01000012_07566408_07581870 RBM25, RBM25A, RBM25B coding upstream 187254 7566408 ~ 7581946 (+)
CI01000012_07548354_07550668 VTI1B coding upstream 217598 7548354 ~ 7551602 (+)
CI01000012_07806089_07811902 BEND3 coding downstream 5007 7805248 ~ 7811902 (+)
CI01000012_07812015_07812349 BEND3 coding downstream 11774 7812015 ~ 7812653 (+)
CI01000012_07817578_07821568 NA coding downstream 17337 7817578 ~ 7822023 (+)
CI01000012_07822979_07844745 WDR35 coding downstream 22169 7822410 ~ 7845560 (+)
CI01000012_07847662_07849170 KCNS3A coding downstream 46303 7846544 ~ 7849734 (+)
G73321 NA non-coding upstream 34502 7734296 ~ 7734698 (+)
G73175 NA non-coding upstream 53754 7707675 ~ 7715446 (+)
G73262 NA non-coding upstream 347311 7420693 ~ 7421889 (+)
G73162 NA non-coding upstream 368923 7395368 ~ 7400277 (+)
G73258 NA non-coding upstream 396386 7372589 ~ 7372814 (+)
G73346 NA non-coding downstream 1680 7801921 ~ 7802123 (+)
G73359 NA non-coding downstream 55102 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 69157 7869398 ~ 7869602 (+)
G73364 NA non-coding downstream 80409 7880650 ~ 7880875 (+)
G73370 NA non-coding downstream 102208 7902449 ~ 7902830 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1844895 5922385 ~ 5929186 (+)
G71623 NA other upstream 1952595 5813517 ~ 5816605 (+)
G71548 NA other upstream 2207767 5550493 ~ 5561433 (+)
G71221 NA other upstream 2228744 5538525 ~ 5540456 (+)
G71218 NA other upstream 2230816 5535852 ~ 5538384 (+)
G73578 NA other downstream 566565 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2421714 10223697 ~ 10236276 (+)
G75533 NA other downstream 3344576 11144817 ~ 11145739 (+)
G76385 NA other downstream 4830514 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006737 pdss2 coding NC_007124.7 CM002897.2 32660544 ~ 32726178 (-)
bowfin (Amia calva) AMCG00003959 NA coding CM030121.1 CM030121.1 26532149 ~ 26561121 (+)