ccdc94 (ccdc94)


Basic Information

Item Value
gene id ccdc94
gene name ccdc94
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 11670564 ~ 11676296 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258436.3
CAGTAGAGAGCCAGTCTGACTGTTTCTCCGTTTCTCTGTGGAAGAGAGTGAGACTGAAAGGAGTTGTGTGTTTTTCgggctgtgttttttattgatctGCTGCAGTCATGTCGGAAAGAAAGGTCTTAAATAAATACTACCCCCCAGATTTCGATCCATCTAAAATCCCCAAGCTCAAACTGCCCAAAGACCGGCAGTATGTGGTCCGATTGATGGCTCCATTCAACATGAGGTGTAAGACATGTGGAGAGTACATTTACAAAGGGAAGAAGTTCAATGCAAGAAAAGAGACAGTACAGAATGAGCTGTATATGGGGCTGCCCATCTTTCGCTTCTATATTAAATGCACAAGATgtttggcagaaatcacatttaaGACAgacccagagaacacagactACGCTATGGAGCACGGTGCCACAAGAAACTTTCAGGCTGAGAAGCTGATTgaggaggaagaaaagaaaatccaaaGGGAACGAGAAGAGGAGGAGCTAAATAACCCCATGAAGGTTCTAGAGAACCGTACACGGGATTCAAAAATGGAGATGGAAGTCCTGGAGAACCTACAGGAGCTGAAGGAGCTGAACCAGCGGCAGGCTCAGGTGGACTTTGAGTCCATGCTGGAAGAGTACAAGGAGCTGGagaagagacagaaggagaaggagcaggaggaggatgagagagagaccAAAGAAATGCTGGATAGAGCTTTAGTGAAGAGGTTGAGGGACTCTGACTCGGACTCGGACTCAGATCAGGAggaaaagaatagaaaagagCAGCAGAATAAAAACGCTGCTCTGAAACCCACAGATATCCTGACTACAAAGGAAGGAGCAGACATAAAGGGCTCCTCCACCGGGGTGAAACGCCAGAAAGTTGAAAGCTGGGAGAGGAGTGTTGGAGGTTTGGGAGGAAAAAGTGCACTGGGATCACTGGTAGTAAGGAAGAAGCCTGCAGCCACCACAGCTACAGTACAGCAGCCGACAGCTGTAGGCCAGACAGCTTCTTCTAAAACTGCAGAGACCTCTGCTACAGCCACTGCCGGCAGCAGCCAACCAGTGGTGGTCCAGAACGGTTCCTCTCTCAGCCTGCTGGGGGCATACTCGGACAGCGATGACAGCAACTCTGACTGAGCTTCTAGTGCATTAGTGCTGATGAAgactatttttactgttaaaattcgcataatacagaaaaaaaaatctttcccCCTATTTTAAGGTGGAGACTTTTGTTGGatagatattttatttggacataatttttaataatattctagTTGATGGATTTATAATTGAAGTAAAGACATTTCCTCAGTCATGTTTATCATATTTCTTGGTTTTAAATAAGAAGTTTTTTCATGATgccattttatttactaaaatatcTCACACACATCTCCCTCACACAGATATGAttactctttctttttatggTTTGTCATACAGCTCACACACATGCCCTATCTTTTGTTTGATATGTTATTTTTACTGCTTTTGTTCCTCCAAACTCGATTGATAATCCTTTCATAGTAGTGCAAAAGCCTCTAATCCACCCTGATTTATATATTGAGCTTATCTGACCTTATCGGTTAGGAGGGTGGTGTCACCCAAGCGCAGCAGATGGCTATTTTCAAACTAGCCTGAGTTTGTTTTTCCTGAGAAATCAAGACAAATCCTGGACCACTTCtagttaaaacacttaaaacacgCCCTCTCCACTAAAACCTCCTCTTAATATGGGACTTCAGTAGTgtacatgtaaatgtaatgggaggctgatatattttaacatttataaaaactaaagtaaaatCAAATTGATGAATATATTAGTCACTGGAAtagtattttaaagtgttaatatATTCCCAAGTAATTAAAATGGctggtaaaaaataaacatcattagaataca

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 94

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258436.3 True 1923 mRNA 0.42 8 11670564 11676296

Neighbor

gene id symbol gene type direction distance location
LOC111194538 crygn,LOC108427116,LOC100699485,LOC107600194,LOC103353965 coding upstream 88345 11577839 ~ 11582219 (+)
LOC103036211 NA coding upstream 122324 11545936 ~ 11548240 (+)
LOC103037664 LOC103037664,LOC108427112 coding upstream 398939 11268452 ~ 11271625 (+)
LOC103025147 vapa,LOC108280766,LOC108427204,LOC107750204,LOC107683769,LOC107684566 coding upstream 653938 10991105 ~ 11016626 (+)
LOC103031053 LOC108427202 coding upstream 734763 10887626 ~ 10935801 (+)
LOC103034421 shd,LOC107558290,LOC107729990,LOC107600191 coding downstream 1974 11678270 ~ 11705557 (+)
LOC103034099 NA coding downstream 37775 11714071 ~ 11721675 (+)
LOC103042008 NA coding downstream 51239 11727535 ~ 11759214 (+)
LOC103033776 plpp2,LOC103033776,LOC108427214,LOC107558288,LOC107729984,LOC107713693,LOC107667850 coding downstream 86696 11762992 ~ 11807474 (+)
creb3l3 NA coding downstream 452873 12129169 ~ 12175408 (+)
G151052 NA non-coding upstream 422138 11248103 ~ 11248426 (+)
G151028 NA non-coding upstream 561658 11108671 ~ 11108906 (+)
G151022 NA non-coding upstream 597371 11072899 ~ 11073193 (+)
G150976 NA non-coding upstream 653146 11016753 ~ 11017418 (+)
G150953 NA non-coding upstream 728561 10939983 ~ 10942003 (+)
G151151 NA non-coding downstream 133755 11810051 ~ 11810310 (+)
G151181 NA non-coding downstream 286813 11963109 ~ 11963523 (+)
G151226 NA non-coding downstream 323027 11999323 ~ 12092980 (+)
G151227 NA non-coding downstream 406026 12082322 ~ 12084600 (+)
G151229 NA non-coding downstream 412882 12089178 ~ 12095115 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 66523 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 109020 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 130727 11531569 ~ 11539837 (+)
LOC103037335 LOC108280688,LOC108427207 other upstream 139153 11278365 ~ 11531411 (+)
G150935 NA other upstream 929426 10740733 ~ 10741138 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other downstream 1425098 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other downstream 1426819 13103115 ~ 13109604 (+)
LOC107197015 NA other downstream 1553806 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 1621298 13297594 ~ 13335076 (+)
G151621 NA other downstream 1924313 13600609 ~ 13633602 (+)

Expression


Co-expression Network