LOC103040483 (LOC108427120)


Basic Information

Item Value
gene id LOC103040483
gene name LOC108427120
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 12183829 ~ 12187233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258450.3
actgtataaaatttaCACAAATGGCTGACATTCCTCTATATGTGTaatcttaaaaatgtatactgTTAAACAGTGCTTTAACAACTATGCTGTGGAAAAGTCAAAAGTCATGTTATATTAATATGCACCCACCTCTCTACACTGTTTAAAAGTAACTGTAAAGAAGAACCAATTAGTAAAGATTTGTTTTACACATAAACATCTTATATAAGCCTTTTTAATGGTTCTGGAGCCAGAAATGTATCGCTAAACTAatttgtgatttattgtgtgtgtaatataaaagACAGGGGGGTGTTAGGGGTCTAATAAACATGTTTGATTACATGTTTTGTTGCTGGAGTGTAATCTTGATGCCACTGGCGCGCGCccttcctctctcctctctctctccctccccctgATTCAGTGCGAGTGGTTGTTATAAACCTTCTTCGCAGAGCCGCGCCACGCGCACCGCTCAGTTCAGTGACAGACAGCGGACGGAGGAGCCTCGCGCGCTCAGTTCGGTGTgaacagtgtgttttttgtgcgCTCTTTTGCGGTTTTGCGTAAAGGGCGCTATTTTTTGGGACATGGACTCCAAGAAATCATCAGTTTCGGAAAAATAACCAGACaaacagaaatagagagagagatgcaagCGAACAGCAGCTCATCCCCGCTCGGCTCAAGCCCGTGCGCTCTGGGTCTGGGCGCTGACGGGGAAGACGACCCCTGGAACCGGAGCGACATCCCGCTGCGCTGCTGGCTCCAGCTGCTCTCCAAGGACCCCGCCGTGCAGGCGCACGCGGACAGCGCGAGCGCGGTGCTGCGCGTGGCCATCGCGCTGGTGTACCTGGTGGTGTGCGCTCTGGGACTGGTGGGTAACGTCCTCGCGCTGTGCGTGCTGCGCTCTCGCCACGGTTTAAGGCGTTCCTCCATCAACTGCTTCGTGATGAGTCTCGCGGTCACCGACCTGCAGTTCGTGCTCACGCTGCCCTTCTGGGCGGTGGACACCGCGCTGGACTTCCGCTGGCCCTTCGGAAAACTCATGTGCAAGCTCGTGAGCTCGGTGACCACCATGAACATGTACGCGAGCGTCTTCTTCCTCACCGCTATGAGCGTGGCGCGCTATTGCACGCTGGCCACGTCGTTGCGCACAGCCCCGGACAGCGCGTGCAGCGGCGCGAGGCGCGCGAGCGTGGCTATCTGGCTCGTGGCGCTAGTTGCCACTCTCCCCCACGCCATCTATTCCACTACGGCGCGCGTGGCCGATGACGACGAGCTGTGCCTCGTGCGCTTCCCGGACACGGGCGGCTGGGACCCGCAGCTGCTGCTCGGCCTCTACCAGACGCAGAAGGTGCTCCTGGGATTCCTCGTGCCCTTAGTGATCATCTGCGCGTgctacctgctgctgctgcgcttcGTGCTGCGGAGGCGCGTGAGCAGCGGCGCGCCACCCAGCTCCGAGGAGCGCGAGCGCAGCCGGCGCCGGCGCCACTCGCGTGTCACCAAGTCCGTGACGGTGGTCGTGCTGTCGTTCTTCGTGTGCTGGCTGCCCAACCAGGCGCTGACGCTGTGGGGGGTGCTCATCAAGTTTGACCTCGTGCCCTTCAGCAAGGCCTTCTACAACGCGCAGGCCTACGCGTTCCCTCTTACCGTCTGCCTCGCGCACACCAACAGCTGCCTCAACCCGGTGCTCTACTGTCTCGTGCGCCGCGAGTACCGCGCCGGACTTAAGCAGCTGCTGCTCAAGGCCCTGCCGTCCGCCCGCACCCTCGCCAGGCTCGTGCCGTCCCGGGGCAAGAAGGTGGCTGAAGCACCGCAACAACGTGGTGGTGGGACCACCGTGCAGGGGCTGGCGGTGGTGCGCGTGGTGGATGGAGGGCTGTGAACGCTTTAGGAACCAACCAAAAGGATCGAGCATCAACAGCATGAACAGCATCAGGAgcatcagcagcatcagcaccaaGAGGAGCAGCAGAGTTAAAAGTGGGCGTGGCTTTGTTTTGCAGCTGTTTTAGTGCATCCCACTGCACATCTGCAGAAGGAGTGACTCAAACCTTAAGTTCACACACTTACGTTTATTTATTGCACTAATGATGCCGGAAAATAGGGAAATTAACGAGGACGCCCGATCCCGCGCGCGCTGTGATCAGAAAGAAGAACACTCATATTAAGAGGCTTATCTCGGCTAATCCACAGGAAGGCTCGCGCTGGGATTCAGGAACTTTCCGACTCTCCAAAAACTCCGTGAGCTCTTCTAATCTGGAGGAAGAGGGAGCGCGCGGGGCTCTTAAGGCTCTAATGAACAGATTAGTCATCCTCACTGATAATAAGTATATAAGTCTGTGTATTACTGAGAAAATAACTCTCCTGCTCTACAGCTTCACTGAAGCCTCTCAGATCAGAAGCTGGAAACTCTAAGGTGACATGAGGGTAATTTTTAATAAGGTGTGGTCTTGAGATAAAATACTGAGATAACTGTAAGATCTTGTGGcctcaataaacactaataCGTGGCAgcaacatattattttttttattatggtcTCTTTTGGCTTCAACATATGGATTTTGACAGCAGCTGCAATCCTTAAAACAtgcctttatctgttttttttgtggtctcgttttttaaatagatggcatcattatattatatttttgtggcATGAATAATTTAGTAAATGGCAGCAATATGTTTATTGTATTATCAATATATTGATTTAtggtttatatatattgttttgacctcaatatattattttgtggtctcagtaatatattaattttggcCTCAATTTATTTTCTTGTGATCTCAAGAACTTAATATTAGTCTTAATAGTTTATCATGTGTATCTTGTGGAACCAAGAACTCAATTTATCAGTTTATTCTCTTTGGGCCTCAATTAATTTAGTTGGTGGCATCAATTTAAAACTTTgccctaaatatatatttttgtgcccTCAATGAATTCTTAAGTGACataaatattctaatttgtgacatcaatatattttataatagcCTCAAGGAACGTGCACTCTCAATGTATTCATTTGTAgcctcattttttttactcaaagcctcaatattttcatttgtcatctgtatatacagtacatttcctTGTTTTAGCTTCAGTATTTTAGTGTTAGGAATCAATACATTCAATTGTGGCATCAATATACTGCATTTTATTAGCCCTCTAGAAATTAATCTGTAAGGGTTATCATACaatgataacaataaaaataattacattaaaatatttttttcttgatattgatatactgtataatctTTTGTGACATCAATGTCGGTTGAATAAATATACCATACTTCAGgctcaatatacagctctgggaaattTAGGaagagaccgcttaaaaatgataactttctttgattttaccaaa

Function

NR:

description
PREDICTED: relaxin-3 receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258450.3 True 3405 mRNA 0.48 1 12183829 12187233

Neighbor

gene id symbol gene type direction distance location
creb3l3 NA coding upstream 8421 12129169 ~ 12175408 (+)
LOC103033776 plpp2,LOC103033776,LOC108427214,LOC107558288,LOC107729984,LOC107713693,LOC107667850 coding upstream 376355 11762992 ~ 11807474 (+)
LOC103042008 NA coding upstream 424615 11727535 ~ 11759214 (+)
LOC103034099 NA coding upstream 462154 11714071 ~ 11721675 (+)
LOC103034421 shd,LOC107558290,LOC107729990,LOC107600191 coding upstream 478272 11678270 ~ 11705557 (+)
LOC103039850 celf5,LOC108444550,LOC108280171,LOC107750904,LOC107667861,LOC107696073,LOC107729965 coding downstream 108250 12295483 ~ 12522294 (+)
LOC107197877 LOC108442433,LOC108280639,LOC106596660,LOC106569828,LOC107750908 coding downstream 661185 12848418 ~ 12875728 (+)
napg napg,LOC107750913,LOC107696142,LOC107687900,LOC107596233 coding downstream 826550 13013783 ~ 13024569 (+)
LOC103038185 NA coding downstream 961876 13149109 ~ 13171989 (+)
LOC103033765 LOC108439882,LOC108280735,LOC107552688,LOC107750941,LOC107696794,LOC107754590 coding downstream 989425 13176658 ~ 13181747 (+)
G151230 ralbp1,LOC107696059 non-coding upstream 79471 12092076 ~ 12104358 (+)
G151229 NA non-coding upstream 88714 12089178 ~ 12095115 (+)
G151226 NA non-coding upstream 90849 11999323 ~ 12092980 (+)
G151227 NA non-coding upstream 99229 12082322 ~ 12084600 (+)
G151181 NA non-coding upstream 220306 11963109 ~ 11963523 (+)
G151251 NA non-coding downstream 1557 12188790 ~ 12191234 (+)
G151257 NA non-coding downstream 31325 12218558 ~ 12218877 (+)
G151264 NA non-coding downstream 61257 12248490 ~ 12249187 (+)
G151272 NA non-coding downstream 105849 12293082 ~ 12293521 (+)
G151302 NA non-coding downstream 356831 12544064 ~ 12607087 (+)
LOC103035375 LOC108427208,LOC108280686,LOC100331938,LOC107713688,LOC107600193,LOC107558294,LOC107729982 other upstream 579788 11587909 ~ 11604041 (+)
LOC103037021 LOC103037021 other upstream 622285 11552539 ~ 11561544 (+)
LOC111194536 NA other upstream 643992 11531569 ~ 11539837 (+)
LOC103037335 LOC108280688,LOC108427207 other upstream 652418 11278365 ~ 11531411 (+)
G150935 NA other upstream 1442691 10740733 ~ 10741138 (+)
LOC103033441 abhd8a,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC108280232,LOC103352801 other downstream 914161 13101394 ~ 13131453 (+)
LOC103033117 LOC108439884,LOC100333521,LOC107696163,LOC107750940 other downstream 915882 13103115 ~ 13109604 (+)
LOC107197015 NA other downstream 1042869 13230102 ~ 13236737 (+)
LOC103039742 LOC108439864,LOC108280459 other downstream 1110361 13297594 ~ 13335076 (+)
G151621 NA other downstream 1413376 13600609 ~ 13633602 (+)

Expression


Co-expression Network