CI01000012_07806089_07811902 (BEND3)


Basic Information

Item Value
gene id CI01000012_07806089_07811902
gene name BEND3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7805248 ~ 7811902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07806089_07811902.mRNA
ACATAAAAGCGCTGAGTCTGGGACAGTTTATTAATATGCAGGTCGCTATTGTTGGCTTATGTATATCATGAACAAGACTAAAAGTTCACATAACCCATTTATGCGCTGATAAAGTTAAAATATGTGCTAACCTTATTTCAGGTTACAATTTTGTTCAAAATGCGGCTCTGGGTTTACATCTGTGTGAAATGCATCAACTATTTTAGTCCGTTCAAACTCAAAAAAGAAATGTTACTGAATGTTACGGATACGATAACATTTATTTTTGGGGCAACATTTAGTTTTATAAAAAAAAACTTAATACTTGTGAGTCGAGTCCCATACTAATCTATGAAGATCTGCTCCCTCAAATATAGCCTTAGTAAATGAATAATTTAAAAAACCCTATAGCGAATTGCAAACCAAATATTAAATGTAAACCCTTCTATGAGGACAAAGTGCACCCAAACAATTCGTGGTAGCCTATCGTTTGGTTTTCTTGGTGTTGCTTACATTTCCAATCTCTTTACTTAGAATTTGCACAACGTCATTTATTAAACCGCACCACCTTCAAATCAATGTTTTAGAATAAAACAACAGAATGCACTATTAGCAATTCATGCACAAAATAAAAGCAGTATCTTGCGTAATAGAGAGAATAGCTATCTTATATTCACATTCATTATTAATTCTGAAGTCATTATATACACAAAGTGCAAAATTAGCTGTTTAAGCCTACATAAACCATAGTTATTAAAAGTTTTCTAAAACAAATTCACCTATGTAGGCTACTGTGAGGTAAATTTGTGTGGTCACGCTGGTCTATGACGCGGGCGATTCTACACTCGTGGGGCCTCCCGAAATGACTGCGAGTCACGAGAAGTCCCACGCCACAGCGCGCACCTCGCGCATTTCACGGCCACGGCGCCGCAGCTCAGGGATTCACGTGGGGTGGGCTGGCAAAAACCCACAGCAAACCCACAGCTGTGCGGAAATGACACAGTACCGTCACGATATGAGCTCTTCTGTGTGCATGGTTAATGCAGAAGGACAAGTGCCTGATAAAAAAGTTAAAGTCGAGAAAGATGCAGAAGACATTATTGAAAATTCAGAGGGAAAGATGGAGAGCTTCTTTAAGCGCATTACAAAACGTTCAGCTGCACACGCAGGCCCTGAAGTGGAACAGCCCACTAGTGGGAAGAGGGTCAAGGTGACAACACAGGTAGGAGAACATTTTGACGGCAGTTCAGATGATGGAAGCAGGTCATGCTCTCACAGTCACAGATTATCTCCTCAGGAGCAGATTTCCATCTCTTCATACAGGAAACCACTCTACAGCATCACACATCGTATTTCTGAGCGTAAAGCTGCATCCAATCTAGACCAGCACGGAGCCCACAATGGAGTCAGAGCGAGCCATAATGGTGTCCACTTCCAAAAACTGGGCAATTCTAGAAAGCATCACATGTTTAAGGCCTCCCCTAGTGTGGGGGTCACGGGGTCTCCTGCTGCCTTGGATTCTCACCTCTACCCGCTCATCGAGAAGATGTTCTTCCTCCTCAACACACTGAATTCCAGTATGACCCAGCTGCACAGTAAGGTGGACTTGCTCTCGCTGGAAGTGACCCGCATTAAAAAGCAGATGAAGCCCTCTGAGATGGTCATGGAATTTCAACCACCTCCTGAATACCAGTTGACTAGTGATGAGCTCACCCAGCTGATGGAGCAAACGTCCACTGCGGGCGAGCTTGGCTGCAGACTCCTCGTTCAACTGTTCCCAGAACTTTTCACAGCAAAGGAATGCACGCACGGCTGCAGCCTTACAACTAAACGGACATTAGATTCATTGCACCTTCAGTTAATACGTAACTATGTGGAAGTCTGCTACCCGCTGGTGAAAAATGAAAATGTCTGGCAGACGGAGTGCTTGCTGCAGATCAATGATTTCTTGAATCGTTTCTGGGCTCAGAAGGACATGGAGAGTGGTCAGATGTGTGACAAACAGGCTCCGATGGTTGTCGGGTTTGACATGGAACCGAATCACGCTTTCCATTTCATCAGTGAAGATGCCCAGGACGAGAGTCTTTCCCTCAACTCTGGAGATAACAATGATGTTCATCCCAATAATGTCAGCTCAGATATAGTGTTTGACCCCCATGAGACTGCTGGTGACGACTCTGAAGACTTAACTTCCCCAGAGGAGCTTGTCGTGTTTTTGTTGAACAGACTCTTCCCAGAGGTGTTTGAGGAGGGCAAGTTGCCAGAGGGCCACAACAGCATTGGACAGTTGATCATTGATTCGGACAGACTGGAAATTATAAGAAAATACATGGAGGCCAATTTCCCTGATATCCCAGAGGAAACCTGGCTGCAGTTGTGTGTACAACGAATGGAGGAAGCATTGGAGAACACTTCAGTAAATGGCAGTGGTCGTGACAACCGAGAGATGTATGATACCACCCGTCTCCCTGATAACATCTCCATTGTTAAGATCAGTGACCTGTGTGATTACGAGAAACCAAATCGCAGGTCTAAAAAATCATGGCTCGAGCCTGTAGATTTCGATAAACTACAGATCCCTCCTCCAGACTTTGATGTTCCACAGGAGTTTTTACTTACTAAGGAACAGCTAAAAAGCAACTACGAATGCAGTTTATCAATTGGGAACTTTGCATCTCGTCTCCTGGTTCTCATGTTCCCTGAGCTCTTCACTTACGAGAATGCACGAAAATACTACAACTGCAGCGGATCTCTAGGAAAGAAACAGCTGGATCCTATACGAATCAATCTCATCCGACATTATGTCCAGCTACTCTACCCGCAAGCTAAGAACGACCGTGTTTGGACTCTTGAGTTTGTCGGCAAACTTGATGAGCGTTGCAGGCGACGGGATACTGACCAACGACGTACATACCAGCAACAACGGAAGGCCTGTTCGCCTGACCAAGAGCCTGACCCAAAAGACTCTATGCTAACTGCTGGCCTAATTAACGTTCTCTCTTCAGATCGTGTGAAAGAGGACTCTGAA
>TU83614
CGAGAAGTCCCACGCCACAGCGCGCACCTCGCGCATTTCACGGCCACGGCGCCGCAGCTCAGGGATTCACGTGGGGTGGGCTGGCAAAAACCCACAGCAAACCCACAGCTGTGCGGAAATGACACAGTACCGTCACGTCACGCGAGAGGGCACTGACTAGAGAAAAAAAGCAGCGGAGAGAAACACGGACAACAGTTACCCGTGGACAAATCCACTGGATTTAAACACGCGACCATGACTGATGCCTCCTAACCTACTGCACACAGCTGCCCGGCCTCGCAAAGGTGAGTTTGTTTTCAGCCGCGCAGGTAGTTTATGCGCGCCGTGCTGCGGGAGACGGAGCGAAAACTCATCGGTGGATGTTTTTCTTGCCGCGTCACGCAAGAGGGAGAGTTGCGCACGGGGGAGGGAGGGGAAACACGAGAGAGAAGGGCAGGTCTCCGTATTACTGTAAAAAAACATAAAGTGTACATTATTTCCTTAAGGCGTATGCAGTCCAAAGAAGGACCGCAGCAGGGAGCCGCTTGTCTGTCTGTCTCCCCGGTTGTACCGATCCGTGGGGTTTCCACTGGAAGAATGAGGAAGTGGAGCCGGTGGACGGGGGTCGGTACGGTGAAGCAGCGCCTCTCCGGTGCTCTGGCGAGACTTCACGGTGCAAGACATGAAAAACAAATAGGAAAACATTCTCACAGAACTTCAACGTGGAGAAAATTCACTCTGGGAATGTTTAGTTTAACACGCACCATAATTATCTCACGCTTGCCATGACATTTGTTATTAGTCGTGTGTAATACTGACTTCACTGTCTTTCAGCAGGACAAATGCTTCCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAACATTATACAGAAAGATTTTTGTCAATGTCTGCTGTGACTGACAAGTGTAAAGGAAACGTGCAAGAGAAATGTGTGTGGTCAGATAGATGTGTGATTATCACATAATATCAGTAATAATCAGTCATGGGTCTTGTGTGTCTCTTCCCAGGATATGAGCTCTTCTGTGTGCATGGTTAATGCAGAAGGACAAGTGCCTGATAAAAGTATGTAAATTCACACTAAAAGCCCCTTGAGAACCTTCACTGAACTTCACAATTTTCTCTGTGTACTAACATGCATCACATCAAAATAAACAGCCCAAATTAAACGATCCAGTGAAATGCACTGACTTACCTTGGCATCAAATGGAGATGTTGCATTGAAAGTGTAATTGGTATTAGGATCACTGGTGATTGGATCATCTGAAACAGAAATCAAGTATACAGTAGTAAATACAAGTATAATCAAAAACATTTAGCAGAGTTAGAACATCAGATGTAGTCAAAAAGACATAACATTGCATTTGTACTGTAAATGCTCACCTGTAAAATCCACCACTGCCCTAAAACTAAAGCTGGTTTCATGCAACTGTAAAGTCACCATGAAATCAAAATGGACAATTCTTATTCTTTTTAATTTTGTAGTGTTTATTATAAATTTATCCATGCACATCATCATTTCTTTTTTAAATTCAAGTGCCCGATAAAGATAAAAATGTAAATTCAAATAGTCAAAGGCGATGCATGTTACTACCAGCTGTAAATGTTCATCTGTCTCAGCTGATCATTTGGGATCAGATCACTTGAGACAGATATTAAAACCAGGTGTAAACAAGTATCCTGTCAACTCATTAAAGGATAAGTTCACTTTAAAATG

Function

symbol description
bend3 Predicted to enable rDNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and rDNA heterochromatin assembly. Orthologous to human BEND3 (BEN domain containing 3).

NR:

description
unnamed protein product

GO:      GO:0005720, GO:0006325, GO:0000183, GO:0003677

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07806089_07811902.mRNA False 3007 mRNA 0.44 4 7805248 7811902
TU83614 True 1715 TUCP 0.43 2 7806103 7807855

Neighbor

gene id symbol gene type direction distance location
CI01000012_07769675_07800004 PDSS2 coding upstream 5007 7769200 ~ 7800241 (+)
CI01000012_07678377_07700760 ROCK2A, ROCK2 coding upstream 103054 7678377 ~ 7702194 (+)
CI01000012_07645586_07647322 NA coding upstream 157286 7643680 ~ 7647962 (+)
CI01000012_07584742_07586196 KCNF1B, KCNF1 coding upstream 218876 7584742 ~ 7586372 (+)
CI01000012_07566408_07581870 RBM25, RBM25A, RBM25B coding upstream 223302 7566408 ~ 7581946 (+)
CI01000012_07812015_07812349 BEND3 coding downstream 113 7812015 ~ 7812653 (+)
CI01000012_07817578_07821568 NA coding downstream 5676 7817578 ~ 7822023 (+)
CI01000012_07822979_07844745 WDR35 coding downstream 10508 7822410 ~ 7845560 (+)
CI01000012_07847662_07849170 KCNS3A coding downstream 34642 7846544 ~ 7849734 (+)
CI01000012_08159919_08162280 NA coding downstream 347705 8159607 ~ 8162336 (+)
G73346 NA non-coding upstream 3125 7801921 ~ 7802123 (+)
G73321 NA non-coding upstream 70550 7734296 ~ 7734698 (+)
G73175 NA non-coding upstream 89802 7707675 ~ 7715446 (+)
G73262 NA non-coding upstream 383359 7420693 ~ 7421889 (+)
G73162 NA non-coding upstream 404971 7395368 ~ 7400277 (+)
G73359 NA non-coding downstream 43441 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 57496 7869398 ~ 7869602 (+)
G73364 NA non-coding downstream 68748 7880650 ~ 7880875 (+)
G73370 NA non-coding downstream 90547 7902449 ~ 7902830 (+)
G73380 NA non-coding downstream 107655 7919557 ~ 7919765 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1880943 5922385 ~ 5929186 (+)
G71623 NA other upstream 1988643 5813517 ~ 5816605 (+)
G71548 NA other upstream 2243815 5550493 ~ 5561433 (+)
G71221 NA other upstream 2264792 5538525 ~ 5540456 (+)
G71218 NA other upstream 2266864 5535852 ~ 5538384 (+)
G73578 NA other downstream 554904 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2410053 10223697 ~ 10236276 (+)
G75533 NA other downstream 3332915 11144817 ~ 11145739 (+)
G76385 NA other downstream 4818853 12630755 ~ 12675666 (+)
G76374 NA other downstream 4933629 12745531 ~ 12749169 (+)

Expression


Co-expression Network