CI01000012_07812015_07812349 (BEND3)


Basic Information

Item Value
gene id CI01000012_07812015_07812349
gene name BEND3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7812015 ~ 7812653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07812015_07812349.mRNA
ATGCTGAAGTGAGGGAGATTGTCCAACAAAGTCTGTCTGTAGGAAATTTTGCTGCTCGCCTTCTCGTCCGTCTCTTCCCAGAGCTTTTCACACAGGAAAATTTAAGGCTGCAGTACAACCACTCTGGGGCCTGCAACAAGAAACAGCTAGACCCTGTGCGCCTCAGACTTATTCGTCATTACGTGGAGGCCGTCTACCCTGTTGACAAAATGGAGGAGGTATGGCACTATGAATGCGTGCCAAGCATTGACGAGCGCTGCAGGCGCCCCAATCGCAAGAAATGTGACATTCTAAAGAAGGCAAAGAGATCAAACAACACTGTGACTTATTCTTAAACAATGTTCCTGCAAAGTGCAGACCTGTTTTCCTATATTTTACACAACATACCTGTTATTTGCACAAGTCCATAAGCTGAAGCATATTGAAACTTGTCCTTGTTTGAGGTGCAGTTCATGTCCATGGCCTTTAAACAGGATGGGATAGTAGGTGACAGAAAGGTTTGTGATTGAAGCCACTATCACATGACAGATATTAGTGTTACTATTTATATGCCAAAATATTATTGATGTTATTCTAATGATTAATAGATAAGCTAAAGTTAGCCTTAAATCAACTTAAATGTAAACGTTTAGTTCTTTA

Function

symbol description
bend3 Predicted to enable rDNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and rDNA heterochromatin assembly. Orthologous to human BEND3 (BEN domain containing 3).

GO:      GO:0005720, GO:0006306, GO:0000183, GO:0000182, GO:0043967, GO:0036124, GO:0000122, GO:0080182, GO:0034773, GO:0098532, GO:0006325, GO:0006351, GO:0005515, GO:0003677, GO:0005730

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07812015_07812349.mRNA True 639 mRNA 0.41 1 7812015 7812653

Neighbor

gene id symbol gene type direction distance location
CI01000012_07806089_07811902 BEND3 coding upstream 113 7805248 ~ 7811902 (+)
CI01000012_07769675_07800004 PDSS2 coding upstream 11774 7769200 ~ 7800241 (+)
CI01000012_07678377_07700760 ROCK2A, ROCK2 coding upstream 109821 7678377 ~ 7702194 (+)
CI01000012_07645586_07647322 NA coding upstream 164053 7643680 ~ 7647962 (+)
CI01000012_07584742_07586196 KCNF1B, KCNF1 coding upstream 225643 7584742 ~ 7586372 (+)
CI01000012_07817578_07821568 NA coding downstream 4925 7817578 ~ 7822023 (+)
CI01000012_07822979_07844745 WDR35 coding downstream 9757 7822410 ~ 7845560 (+)
CI01000012_07847662_07849170 KCNS3A coding downstream 33891 7846544 ~ 7849734 (+)
CI01000012_08159919_08162280 NA coding downstream 346954 8159607 ~ 8162336 (+)
CI01000012_08234924_08239665 NA coding downstream 422106 8234759 ~ 8239885 (+)
G73346 NA non-coding upstream 9892 7801921 ~ 7802123 (+)
G73321 NA non-coding upstream 77317 7734296 ~ 7734698 (+)
G73175 NA non-coding upstream 96569 7707675 ~ 7715446 (+)
G73262 NA non-coding upstream 390126 7420693 ~ 7421889 (+)
G73162 NA non-coding upstream 411738 7395368 ~ 7400277 (+)
G73359 NA non-coding downstream 42690 7855343 ~ 7855654 (+)
G73363 NA non-coding downstream 56745 7869398 ~ 7869602 (+)
G73364 NA non-coding downstream 67997 7880650 ~ 7880875 (+)
G73370 NA non-coding downstream 89796 7902449 ~ 7902830 (+)
G73380 NA non-coding downstream 106904 7919557 ~ 7919765 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1887710 5922385 ~ 5929186 (+)
G71623 NA other upstream 1995410 5813517 ~ 5816605 (+)
G71548 NA other upstream 2250582 5550493 ~ 5561433 (+)
G71221 NA other upstream 2271559 5538525 ~ 5540456 (+)
G73578 NA other downstream 554153 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 2409302 10223697 ~ 10236276 (+)
G75533 NA other downstream 3332164 11144817 ~ 11145739 (+)
G76385 NA other downstream 4818102 12630755 ~ 12675666 (+)
G76374 NA other downstream 4932878 12745531 ~ 12749169 (+)

Expression


Co-expression Network