LOC103025849


Basic Information

Item Value
gene id LOC103025849
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6504153 ~ 6520788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678571.1
cctatgagaaaaatgaatagGCTTTTCAAAAACCCGCCTCTGTCatattctgtggtaaataaatctgttcagacccctgtacgttttattctgtgtacattttactcctgaacatcactggatcctctgaattacagGATAATTTAAGAGTCATAATGAGAAAaggctaactttaagctaatgctacagcggagtGAAATGACCTCCCAGCCTAGCTGCAGAGATCAGCCGGGGACTattttcggcacaacaccagcgAACTCCGGCCGTAACTATACatcttattaaacacagctgagccaactaatgaactaactgcgcttactgaggagagctgagggtgtcacagcataaaataactaaaacagACCTCGCTGCTTGTTGGATGGCGCTCGCGCTCCTCTGCGCAGGGGCTTTGGGAACTCCGCTGCGCACCACCGCGCGCCCCGAGACCGACGCACAGTCTTGCACCACACACGCCAAGGCGCTGCTGGTGAGGCTGAAGAGCGTGCTGGAGGCAGCGCTGGATCAGAAGAGGTCAGTGATGTTCAACGGATTTAACTGCACGGAGCTGTCCGTCATTGTCGTCCCCCACAGCCAGACCCCCTCCATATGCCAGCCCAGCCAGCATGTGACGTGCTCCAGCCAAAGCAGCCAATCCTTCAATAAGAATGAATGTCTGAAGAACATCACAGGAGATCTCCAGTATTACCGGTCCATGCTGAACACTTATGTAAAGTCTCTGGATCAGACAAAGtcccagaccatcactgaccTCACCTCCATCACTGACTCCATCCAGACCCTTCAGAAGAACTGCCAACCACTGCAAAACACGGAGGAGCAGCAAACTGAAAATTGGAAACCCAAAGGCCAAGCGTTTGAAGACCGTATGGATCTGTGTAAGCAGCTGAAGGGCTTCCACATCCGCGCCATCACCATCAACCGAGCTCTCGGCTACATCAGCGCCGAAGCTGATAACAGCTAATAAACCTGCATCTCACTactcatcatcttcatcatcatcaacttCATCACCATCACCCTAAATCTAATGTTCAAACTTTTACTCTGACCACGACCGTGTGAATGCATAAAGTCTGCACTACCTTTCTACACAATCTCCATAGAGCAGAACAACTGCCCCAAAAAACTGCCTGATGTGTTTTGCACTAAAGCCTATAAGCTAGCTGCATCTGTGGAGATGGAGACtttgttatttacatttatgtgttatttaatatttaaatatttaatatttatt

Function

GO:

id name namespace
GO:0043330 response to exogenous dsRNA biological_process
GO:0032496 response to lipopolysaccharide biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678571.1 True 1264 mRNA 0.47 7 6504153 6520788

Neighbor

gene id symbol gene type direction distance location
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding upstream 3197 6005866 ~ 6500956 (+)
mfsd1 mfsd1,LOC106580941 coding upstream 501693 5982410 ~ 6002460 (+)
LOC111194497 NA coding upstream 538778 5964776 ~ 5965375 (+)
gfm1 gfm1 coding upstream 554750 5935188 ~ 5949403 (+)
mlf1 NA coding upstream 571330 5915599 ~ 5932823 (+)
trnat-agu_4 NA coding downstream 25916 6546704 ~ 6546777 (+)
trnat-agu_5 NA coding downstream 26159 6546947 ~ 6547020 (+)
trnat-agu_6 NA coding downstream 26566 6547354 ~ 6547427 (+)
trnat-agu_7 NA coding downstream 26886 6547674 ~ 6547747 (+)
trnat-agu_8 NA coding downstream 27968 6548756 ~ 6548829 (+)
G149800 NA non-coding upstream 39273 6463101 ~ 6464880 (+)
LOC111194498 NA non-coding upstream 530301 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 537722 5966160 ~ 5966431 (+)
G149766 NA non-coding upstream 544213 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 553812 5949851 ~ 5950341 (+)
G149934 NA non-coding downstream 220738 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 232230 6753018 ~ 6763106 (+)
G149944 NA non-coding downstream 249176 6769964 ~ 6827772 (+)
G149952 NA non-coding downstream 283691 6804479 ~ 6807042 (+)
G149960 NA non-coding downstream 372528 6893316 ~ 6893651 (+)
G149754 NA other upstream 776733 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1245292 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1304168 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1389437 5111324 ~ 5114716 (+)
G149595 NA other upstream 1401795 5090982 ~ 5102358 (+)
c17h3orf80 NA other downstream 62258 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 414553 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 728377 7249165 ~ 7251366 (+)
G150099 NA other downstream 1248896 7769684 ~ 7805254 (+)
G150131 NA other downstream 1353852 7874640 ~ 7879301 (+)

Expression


Co-expression Network