LOC111194453


Basic Information

Item Value
gene id LOC111194453
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8298244 ~ 8299583 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678577.1
GCGTTTCCCGATAGCGATTGTTCTTAGGGATTTAAGAACAACTTTAAGAACGACTTAACTTTAAGAACGCCATTTTTCCGACTGTTTCCAGAAGCCACTCTTAAGTCTCCATACTTACGAAGGACCTTTAAGTAGCACTTTGGTGGCTCCGCCCCCGTGTCTGTGAGGTTTAAGGCAAAGCCAGATGAAAACTAGACCACCGATTTATATACAGTTCTTCATTATTAAGCCACAAAGGTATAATTTTGTATGATATAAAAagccaaataaaatatatttacttataagtaaataacatttataaaaaaatttcaCTTGCAATTACACGTCAAGCCTATAAATAGGCACACAATTGACGCATCATTCCTCAATCTGGAAGCATGTCTACCCGACCACGCAAACGTAATTTCTCACAAGACGAACTAAGCCACATGCTGGAGGAAATCGAAAAGAATCAGCAAATACTCTTTTCTAAAGCTCGGGGAAGTtcaacaaacagagaaaaaaaggcaaaaatgggAGGATATTGGCAAAAACATAAGTGCATGTAGTACAATCCAACGGACAGCGatggacataaaaaaaaaatggcatgacttttccagtcaagcaaaaaaaaaaggagcagaAATACGGAAAGAGAGGGCTAAGACTGGTGGGGGTCAGTCATCTATACCAGCCCTATCTCCTGAAGAGGAAAGAGCTCTTGCAATACTAGGGCCAACTGCAACCAGAGGGATCTCTGGTGGGGTAGATGTGTGTTCAAATGAGTTCCCATCTACCCCACCTCAACCTACATCCCCTGTACATCCCTCATCAGCATCAGACAGTCCTGCATCATCTCCTGGCCCTTCCGTTACACAGACTAGTCTTAGAGCTCCACCTACTACAGAGACCCCCCGAAACACCTGTGCCTGTAGTGAGGAGTTAATTTTAATAGAAAGAGAACGACTGAACATTGAAAAGGAGCGGCTCCAGTTAAAAAGGGAAAAGCTGCAACAGAGGGAGAGGCAACATCAAGAGCTGGTGGACCTGAAGAGAGCTAAACTTGAAATAATGGCCAAACAGCTTTCTGTGGCTGAATTTCAGCTGTCCAGGCCAGCTATCTCCGTTCCCATCATACTGCCCTCTGAACAAGACCCCAGTTCCACTGAAAACCCAcagcagatataaaaaaatatgccagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678577.1 True 1187 mRNA 0.43 2 8298244 8299583

Neighbor

gene id symbol gene type direction distance location
LOC103039989 LOC108427187,LOC108429492 coding upstream 118625 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 281158 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 460819 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 670704 7620597 ~ 7627540 (+)
srprb srprb coding upstream 686633 7606489 ~ 7611611 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 29715 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 69786 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 86719 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 183963 8483546 ~ 8493022 (+)
upf1 upf1,LOC107724030,LOC107696277 coding downstream 195512 8495095 ~ 8519332 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding upstream 18362 8276305 ~ 8279882 (+)
LOC111194510 NA non-coding upstream 22738 8271313 ~ 8275506 (+)
G150254 NA non-coding upstream 37244 8207468 ~ 8261000 (+)
G150245 NA non-coding upstream 107503 8188267 ~ 8190741 (+)
G150239 NA non-coding upstream 142399 8155636 ~ 8155845 (+)
G150269 cplx4c,LOC108427184 non-coding downstream 13444 8313027 ~ 8324648 (+)
G150297 NA non-coding downstream 137012 8436595 ~ 8437402 (+)
G150292 NA non-coding downstream 282861 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 292558 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 340308 8639891 ~ 8640174 (+)
G150131 NA other upstream 418943 7874640 ~ 7879301 (+)
G150099 NA other upstream 492990 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1046878 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1350308 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1711875 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 349247 8648830 ~ 8656708 (+)
G150579 NA other downstream 1256076 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1551635 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1842541 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1891937 10191520 ~ 10279830 (+)

Expression


Co-expression Network