CI01000012_07813654_07814853


Basic Information

Item Value
gene id CI01000012_07813654_07814853
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7812900 ~ 7814853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07813654_07814853.mRNA
TATGCAAAGTCTGTCAGTGCAGGCACTGACTCTGCGACAGCTGGGCAGACTGAACTCTCTGCAGCTGCTCTCACCGTGCCATGGCTCCGGCCTCAGCATGTGGTGCCCACGGACGTTACATGCTCGTCAGCTGTGGGGTTCAGCCACTCCACAGACGCACCGAACAGCTATGTGGCAAAGATCATGGGATGCTCGGCAAAGCTGGTTGCTCCACCAAACACGGCTCAAGAGCACAAGAAAGAAAGGGAAGCAGAAAAGGCTAGTGATTATGAGGACGAGCTTCAAGATGACCCAGGCCTGCCAAAAGACTACAAAGACCATGAAAAAACTGTCCAGTCTCTACGTTTCGATCTGGTTTTGAAGGCTGGATTGGACATTGCACGACATGGTGTGGAGGATGCTTTTTATAGCCTCAAATTGAGACTGAATGGTCAGAAGCTCTCAAAAAAGAGCAAAATGGTTAAAGTGGGGGATACACTGGATCTGATTCTAAATGAGGACAAGGAAATGGACACAGTCTTGCTGAAAAGAGTGATCTTAAAAAAGGTGGTTGGAGAGACAAAAGATGCAGAAAAGCAGAGAGTCATTCTAAGAAGCTGGAAACACCTACAACTTCCCAGAAAGGATGTGTACAAGCAGTGAAGACAAATTCTATTATGTGTTTGATAGGTGAAAGGTCAGAAACTGGGACAAAAGTGGTATTTCCTATTTCATTCTCCAGCCGTTTGATTCAGTGTTTTCTCTGCACAACAAAAACTGAGGGTCTTTCTCACATCTGTTCACTTGACAGTAGTTCTCATACTAGTTAGTTCTCATGTTCTCATACTACTTGCAGATGTTTTTATGAACTTTACAGGTCACAAATGGAACACAAACACATCCTAATGTTTAGAGGTGGTTTGTGTTATATGCATTTTTTTTTTTGTATTTTTATTTAGTATTTACTAGTTTCACAAAAATACCATTGTGAGATCAGATTGCGTTTGGGATATTAAATGTTTTCAGGATTTTTGATCCCGTTTATAGCTTATTTAGCTTACTATTGTCTTTATGACATAGGTAGATTTTCAGTGAGCAGTCTTCAGAAAAGGTACTGAGAGCCTCTGCATACAACTGTACTTAACAGAGCCAGATTAAAAAAGAAATGTTTTGCACAGCATGTTTGCAGATTATTCAAAAGTGAGTCCAAACCTAAACAAATACAGGTTCCAAAACTGTATTGCTTACTTTTTTTCTTCATTATGATGACCAGTGGTGGAATGTGTAAAGAACACAAATTTGATCTTGATAAACATCAAAGATAAACGTATCTGTCTTAACTTAGTTTTTTTTAAGGTTTTCTCTGAGGATAAAGGGCTCCCATTGACCCTGACTTGTGTATATGAATTATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07813654_07814853.mRNA True 1396 mRNA 0.40 4 7812900 7814853

Neighbor

gene id symbol gene type direction distance location
CI01000012_07761466_07761786 NA coding downstream 50769 7761432 ~ 7762131 (-)
CI01000012_07716912_07750520 SOBPA coding downstream 62380 7716655 ~ 7750520 (-)
CI01000012_07705100_07707005 NA coding downstream 105673 7703949 ~ 7707227 (-)
CI01000012_07556881_07563284 ARG2 coding downstream 249507 7556106 ~ 7563393 (-)
CI01000012_07537907_07544112 RDH11, RDH12 coding downstream 268788 7537441 ~ 7544112 (-)
CI01000012_07925520_07928491 RDH14, RDH14A coding upstream 110603 7925456 ~ 7928491 (-)
CI01000012_07930029_07934648 5NT1A, NT5C1BA coding upstream 114439 7929292 ~ 7934881 (-)
CI01000012_07938822_07940632 NA coding upstream 123961 7938814 ~ 7941045 (-)
CI01000012_07956050_07959414 NA coding upstream 141134 7955987 ~ 7959414 (-)
CI01000012_08156754_08159438 OSR1 coding upstream 341216 8156069 ~ 8159438 (-)
G74381 NA non-coding downstream 118203 7693376 ~ 7694697 (-)
G74378 NA non-coding downstream 211518 7601141 ~ 7601382 (-)
G74376 NA non-coding downstream 214781 7597913 ~ 7598119 (-)
G74363 NA non-coding downstream 248901 7563722 ~ 7563999 (-)
G74113 NA non-coding downstream 467116 7345481 ~ 7345784 (-)
G74477 NA non-coding upstream 18509 7833362 ~ 7836466 (-)
G74490 NA non-coding upstream 40446 7855299 ~ 7855653 (-)
G74492 NA non-coding upstream 54531 7869384 ~ 7869615 (-)
G74498 NA non-coding upstream 83764 7898617 ~ 7898858 (-)
G74500 NA non-coding upstream 88127 7902980 ~ 7903181 (-)
CI01000012_07356934_07358497 NA other downstream 454355 7356863 ~ 7358612 (-)
G72629 NA other downstream 1665406 6147011 ~ 6147494 (-)
G72294 NA other downstream 2347043 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 2396120 5413369 ~ 5416780 (-)
G72204 NA other downstream 2510694 5293773 ~ 5302206 (-)
G74648 NA other upstream 449476 8264329 ~ 8265654 (-)
G74701 NA other upstream 552166 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 1253053 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 1256518 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 1267883 9081877 ~ 9083489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006108 mtres1 coding NC_007124.7 CM002897.2 32636197 ~ 32641537 (+)