LOC103027172


Basic Information

Item Value
gene id LOC103027172
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1402023 ~ 1413005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678633.1
ATGCGCAAAACCGGTGCAGCTTTGATGCGCTAGAGGATGTTTTGATTGGAGGAGCTGTAGCTTCAACCTGGGTTTAGAGTTTAGAGGTGAATAAACGGGTGTTTAAATAAACCGGATTAAATAAGAACTGAATTAACCCGCGCGCTGAGATGACTGCAGCAGTGTCAGCACTGCAGTAATGCGGGTTTATAGGCTGTAGAAATGTGTAgaagtgtgtagaagtgtgtttAATCTGCAGCAGGAGGTCAGGGCTGGTCATGgcgtggaggaggaggagggtgatTATAAACTGGATTAAATCAGAACCGAATTATTCCCAAGAACTCTTTACTAAACCCAACAGGTTCTCCCTCCATCCTCAGCAGAGATGTGGCTTTAAGAAAGTTCTGAAGAAGCCAGAGATCAGGAAGGGAGGTGCAGAAGAAGGTCCAGCTGCAGATCTGAGTGAagcagcagctaaaaagagtacattacctcctcctcctcctctcggACCACCTGTCCGGCCCCCCAGAAACCCCCGGCTGCTCTTCAGACCCCTGATGTTCACAGTGGGGTTTACAGGCTGCTCGTTCGGCGCCGCTGCGATCCTGCAGTACGAGTCGGTGCGGTTCCGGGTGGAGAGCGTGCTGGAGGAGGTTCGGGAGGAGAAGCTGAGGAGACTGGGAGAAGGACAGGTACAGAACAGAGAGAGCCATGATACAGCATACTGGCACAACTGGTGGAATCAGCTGTCGGCGTTCCAGAAGCAGATGATCCTGCTGGTGTCTGCAGTGGACGACTGGTGGGGCAGGAGGAGCGAGGGGCAGAAAACTGCTATAGGTATCATCGCTCTGAACACGGCGGTGCTGTGCTGCTGGAGAATTCCGGTAATGCAGCGCACCATGCTGAAGTTCTTCACCTCCAACCCTGCTTCCAAAACACGGTGCCTTCCCatgctcctctcctccttcagCCATTACTCCATCCTCCATCTGACGGCCAACATGTTCGTGCTGTGGAGCTTCTCCACCAGCGTCGTGTCTCTGCTGGGCAGGGAGCAGTTCCTGGCTCTTTACCTGTCTGGAGGTGTGTTCGCCACCTTCATCAGCTACGTTTGTAAAACAGCGACGGGTCGTCTGGGTCCGTCACTTGGGGCGTCCGGTGCTATAATGACGATTCTGGCTGCTGTCTGCACTAAGATGCCCGAGGTCAAACTGGGAATCATCTTTCTACCCATGATCAGCTTCACAGCCGGGAATGCTCTGAAGGCCATCATGGCTCTGGACACAGCTGGACTTGTTCTGGGCTGGAGGATGTTGGACCATGCAGCCCACCTTGGAGGAGCTCTGTTTGGAGTATGGTACATCTCTTATGGCCATAGTCTGATCTGGAGAAGGCGGGAGCCGCTGGTGAAGTTCTGGCATGACCTGAGGAAAGGCCCTCCTGGTGGAGCGCCACCtagaggaggaggtggaggttcTGGAGCATAAGGCCTTATGCAACGGTGCTCATCTGCCAAACTATATCAGCTACCAAACACAAGGACTGGCACTGGAAACGTAACCTTaaaccttaataaaaaaaaggttgattAAAGGTTAATTTAAAAAGTTCTTTATGGGATTCCATAGAACAAGGCTAAAGCAGTTTATAACTGTTGGTTAAActcttaaagtataaaataaaaataaaataaagacaaaaattaAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09650 PARL, PSARL, PCP1; rhomboid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678633.1 True 1692 mRNA 0.51 9 1402023 1413005

Neighbor

gene id symbol gene type direction distance location
LOC103022131 LOC108280703 coding upstream 209379 1122015 ~ 1192644 (+)
LOC103028630 NA coding upstream 348088 991084 ~ 1053935 (+)
trnav-aac_10 NA coding upstream 419257 982694 ~ 982766 (+)
lhx8 lhx8,lhx8a,LOC108436043,LOC107693563 coding upstream 705328 680199 ~ 696695 (+)
tyw3 NA coding upstream 785670 611239 ~ 616353 (+)
LOC107197232 LOC108436029 coding downstream 34450 1447455 ~ 1460722 (+)
LOC103026285 saga,LOC108440874,LOC108280708 coding downstream 51652 1464657 ~ 1481526 (+)
proc LOC108440860,LOC108440861 coding downstream 110596 1523601 ~ 1535483 (+)
LOC103025667 wdr33,LOC107695163 coding downstream 139790 1552795 ~ 1592500 (+)
LOC103034819 LOC108440876 coding downstream 226304 1639309 ~ 1671242 (+)
G148465 NA non-coding upstream 61525 1339894 ~ 1340498 (+)
G148466 NA non-coding upstream 62993 1338275 ~ 1339030 (+)
G148438 NA non-coding upstream 124981 1193320 ~ 1277042 (+)
G148455 NA non-coding upstream 140952 1259085 ~ 1261071 (+)
G148445 cwc25,LOC107562839,LOC107572154,LOC106587943 non-coding upstream 183587 1215468 ~ 1218436 (+)
G148487 NA non-coding downstream 55647 1468652 ~ 1470443 (+)
G148489 NA non-coding downstream 61459 1474464 ~ 1553513 (+)
G148491 NA non-coding downstream 73395 1486400 ~ 1492989 (+)
G148492 NA non-coding downstream 73882 1486887 ~ 1489556 (+)
G148493 NA non-coding downstream 75982 1488987 ~ 1501398 (+)
G148442 NA other upstream 196623 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 204446 1194535 ~ 1197577 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 590594 2003599 ~ 2193725 (+)
G148599 NA other downstream 699668 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 880627 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 1581201 2994206 ~ 3010066 (+)
G149226 NA other downstream 2578805 3991810 ~ 4009735 (+)

Expression


Co-expression Network