LOC103026285 (saga,LOC108440874,LOC108280708)


Basic Information

Item Value
gene id LOC103026285
gene name saga,LOC108440874,LOC108280708
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1464657 ~ 1481526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678637.1
AGGGGTCTGTAGAGTCAGtgcattatctctctctgttatacagtatctctctctctctctctttacctctctttctctacctctctctatccttTACATCTTGCAGATCAGCGGGATCACCTGTACCAGCATAAAAGAGAATTCGCCACAATGAGTCCGAAGAACATCATCTTTAAGAAAATGTCCAAAGACAAGTCGGTGGGTGTCTACATGGGCAAGCGTGATTTTGTGGATAATGTAAAGTCAGTGGAACCTGTGGATGGTGTGGTTCTGATAGACCCGGAGCAGCTGAAAGGCAAAAAAGCATACGTGGCCTTGTCCTGCACCTTCCGCTACGGCCGAGACGACATGGACGTGATGGGAATCGCCTTCCGGCGGGACATTTACCTCTCCACCCGGCAGGTCTACCCCGCCCTGCAGGACAAGAAGCAGTGCACCATCACCCAGGTGCAGGAGAAGCTGCTGCGCAAACTGGGAGACAACGCCTACCCCTTTTTCTTCGAGTTTCCTGATAATCTGCCGTGCTCTGTTGGACTCCAGCCAGCTCCTAAGGATGTGGGGAAGCACTGCGCTGTGGAGTTCGAGGTCAAGGCCTTCATGGCTGAGAGCCAAGATGCTAAAGTCCGCAAACGGAGTACAGTCACCCTGATGATCCGTAAAGTGCAGTACGCCCCAGACGAGACCGGTCCGGCTCCCACCGTGTCCATCACCCGGGACTTCCTCATGTCGGATAAACCCATGCATGTGGAGGGGAGCCTGGAGAAGCAGATTTTCTATCATGGAGAGCCCATACAAGTTCGCGTCAACATCAATAACGAGTCGAACAAAAATGTGAAGAACATCATTCTTTCAGtggatCAGACCGCCACTGTGGTGCTGTACTCCAACGACAGCTACATGAAGTCAGTGGATGTGCTGGAAACTGAGGACAGTCTGGGAGCTGGTGGAAAAATGGAGAAGACGTACACACTGCTCCCTCTTCTGGCCAACAACAAGGAGAGGAGAGGAATCGCACTGGATGGAAAACTCAAGCATGAGGACACTAATCTGGCCTCTTCTAGCATGTAAGACCACTAACTGCGTgttt

Function

symbol description
saga Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

NR:

description
PREDICTED: S-arrestin-like isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678637.1 True 1087 mRNA 0.51 11 1464657 1481526

Neighbor

gene id symbol gene type direction distance location
LOC107197232 LOC108436029 coding upstream 3935 1447455 ~ 1460722 (+)
LOC103027172 NA coding upstream 51652 1402023 ~ 1413005 (+)
LOC103022131 LOC108280703 coding upstream 272013 1122015 ~ 1192644 (+)
LOC103028630 NA coding upstream 410722 991084 ~ 1053935 (+)
trnav-aac_10 NA coding upstream 481891 982694 ~ 982766 (+)
proc LOC108440860,LOC108440861 coding downstream 42075 1523601 ~ 1535483 (+)
LOC103025667 wdr33,LOC107695163 coding downstream 71269 1552795 ~ 1592500 (+)
LOC103034819 LOC108440876 coding downstream 157783 1639309 ~ 1671242 (+)
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding downstream 385597 1867123 ~ 1886581 (+)
LOC111194472 NA coding downstream 415947 1897473 ~ 1902454 (+)
G148465 NA non-coding upstream 124159 1339894 ~ 1340498 (+)
G148466 NA non-coding upstream 125627 1338275 ~ 1339030 (+)
G148455 NA non-coding upstream 203586 1259085 ~ 1261071 (+)
G148445 cwc25,LOC107562839,LOC107572154,LOC106587943 non-coding upstream 246221 1215468 ~ 1218436 (+)
G148441 NA non-coding upstream 259903 1199910 ~ 1204754 (+)
G148491 NA non-coding downstream 4874 1486400 ~ 1492989 (+)
G148492 NA non-coding downstream 5361 1486887 ~ 1489556 (+)
G148493 NA non-coding downstream 7461 1488987 ~ 1501398 (+)
G148490 NA non-coding downstream 8956 1490482 ~ 1498333 (+)
G148498 NA non-coding downstream 26906 1508432 ~ 1511769 (+)
G148442 NA other upstream 259257 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 267080 1194535 ~ 1197577 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 522073 2003599 ~ 2193725 (+)
G148599 NA other downstream 631147 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 812106 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 1512680 2994206 ~ 3010066 (+)
G149226 NA other downstream 2510284 3991810 ~ 4009735 (+)

Expression


Co-expression Network