LOC111194472


Basic Information

Item Value
gene id LOC111194472
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1897473 ~ 1902454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678653.1
AGTGGCTTGACCTATCTAGAGGGGGAAAGAGTTTTcagctatttttgtttttatacattttttttgttatgataTGATTTTGTAAAACTCTGTTTAGAAAGATGTATTAATGCTGTACCCATcttttttaaaatctgaatGTGGCAGATATATTTgtgaaatatttgtttaaatatttggcccccccccctccactcTAAAATGGTATGTCCTTCTTAAATTAACCACTAGGGGAAGCCTATATAAGGAGTCAGTCTTCCATGGCTGAGAGAGTGGAAATAAGTAGAAAGACAGTGATATTGTGGATCACTGCTTCTGTAAAGATTAAGAGAGTGTTTTGAAAAAACAATTTGTGGTGTTGTTGAACCTctctaaattatatatatactttatttttttttttttttttttttctcttcattttttcatcaaatggactcatttttttccatcaaaagcaccaataaacacacatttgCACTGAAGGTGCTATGTTGTTTGGTCAATTTTTATGTGTAGAGGTGGACATTTTTAGCAGTCCCATTTAAAAGAGGCCCACAACCCTGGCGGACTCTACTACCCGCACTGCAAAGTGTGACAGATGGTGGCAGCGGTGGGATTCCACCGAagaaatttggtggaatactgGCTCCTACACATAAGGTTATGGTAAGACGCAAAAAGGTGCTGTTGCCTAAACGGACTGGGCTACGGTCGCAGACAACCAGATTTCCAAAAACAGAGTCCAGAACTGATGAGGACAAGGAACGCTGGGATACAATGGAATCAGAAGAGGATTTTTCAGATCAAGGTGGGCAGCCTGAAGAGCAAGCTGGGTTTTCTGGCTCACCAGAGGATCCATCGGGGATGTCCACACTAACAACACTTCTGAGTAAGTTTCTCACCTCACagcaagaaagagaggagagactgtTTAAAGAACTTCAGGATCTGAGGACCAGTGTAACAAGACCTGTGCCTGTTGAACAGAGCACTGGAGAAGACACTTCTGCTGCAGCTGGAACACCAAGGTTCCTGACATCTACACTTTCTTCAGATAATCAAAGCCCAAGAGTACCCCTTCCCACACCAAGAGCCAGACCTTCTCAAGTTTCTCAAGATCCGGTTTCACAGCCTGTTCAGGTCTTCCTGCCAACCCAGTCAGCACCTACTCCAAGGGAAAGAAACATCAGAGACCTGTTTCGGCATGAGCCACAAATGCCAGTATTTCGAGATGGTGAGGACATTGAGAACTATCTACTTCGATTTGAACGCCTGGCAAAAACTTGGTTGTGGCCAGTTGAAGAGTGGGCCTATAGATTGGTACCTTTGCTAACAGGTAAAGCACTGGAAGCTTATACAGGAATGGATGAGGAATTATCCAACTCCTATCCGGATCTGAGAGAGGCACTCTTAGAAAAGTTTGACATCTCTGAAGAAACCTACCGACGAAGATTCAGAGGGACAACTGTTCCAGCAGGTGAAACACCTAAAGAAACCTATCACCGTCTCAAAGGTCTCTATCGTCGATGGATGAAACCAGAGACACGCAGCAAGGAGCAGATTGGAGAGATAGTCATCCTGGAGCAGCTGTTTCGAGTTCTGCCTGGAGATATACGCACATGGGTTCAGGAACATGAGCCAACAAATGGACTAGAAGCAGCTCAACTGGCCCAACAGTACCTGAATGCTCGTCGTGGAATAGCCCGTTCTTCACAAGCCTCTCTGCGGGAGTCAAGACCTGCCAGGGTCCATGCCAGCCCTTCTCACTTTGAGCAAGACCAGGACCAGTCGGTGATGCCAGCGGTAGGTCAGAAGGAGACACCACAACGAAAAGGTACTCTCATTTGCTTTTATTGTGGCCAGCAAGGACACAAAGCCTCTGTGTGCCCTCTGAAAAAACCAAAACTTTCTAGTCTGTGTTATGTCCCAAGAGAGGGCGATGTGTCCTCATTGATGGTAGGAGAGTCTGTGTCCAGTCATATTTCTGGTCGGATAGACAAGGACTCCAGTGACTGTATTGAACTAACAGTATTTGTTAATGGACAACCTTTACAGGCTATGGTGGACACAGGGAGTGCTATATCTTTGGTTAAAAGAGATTTTTTGCCACCTAGTATTGTAAACTTTTCCAGATTGACCAACATTCAGTGTGTACATGGGGATGTTAAAATGTATCCAACTGCTGATGTCACTCTTACAGTTCATAATGATGTGTTTCTTATGCAAGTGGGAGTTGTTGATGATTTGCCAAAAGACATGGTGCTAGGAAGGGATCTGCCAGTCTTAGATGATCTAATTGGGGATGTTCATCCTCTAACTAAGCTTGCTTGCCCTGTAGTCACTCGCTCCCACACTAAAGCAGGCCTTGAACCATTACCCTTAATTTCAGATACTTTGTTTGAGGGTGGTAAGGAGGGTCCAAGAAAGTCTAGGCAGAAACGGCGTCTAGAAAAGGCACTAGGTGCACCATCTGGGTCCCCAAATACCAATAATCTTACTACTGGGTTGTGGAAGGTACCAGAGAACATAGGGGAACTTCAGCGAGAAGATGCTTCTCTTACATCCTTATTTGCACAAGTGAATGATAAGGAGGAAGGTGGTGGGCTGTTAAGCTGTAAGGATAAGTACAAAATTGAGAATGGTATCCTTTACATAGTAGAGCCTCAAGGTAATCGTTTGGTTGTACCCTCCAAATGTAGACCTCTTGTTTTAAACCTAGCACACACCATACCATGGGCAGGTCACCTTGGACAGCAGAAAACATACCTCAGGGTTAGTCGCCGGTTTTTCTGGCCTTCAATGTATACAGATGTTAAAGATTTTTGCAGGTCTTGCCCTGAATGCCAGAAAACTAGTCACATCCGCCACTCAGACAGAGCCCCTCTTCAGAGCATGCCTATTATTGTTACTCCATTTAGGCGTATTGCAATGGACATTGTAGGTCCTTTGGAAAAGAGTAGCTCTgggtttaaatacattttggttATTTGTGACTATGCCACTAGATTTCCTGAAGCAGTTCCTTTGCGgtccatcaccaccaccaggaTTATCCAAGCGCTTGTTCACCTCTTTGCCAGAGTGGGTTTTCCAGATGAAATCCTGACAGATCAAGGGACAAACTTCACTTCTCGCCTGATGTCCCAATTGTACCAGCATCTAGGGATCACAGGTATACGCACCACTCCCTATCATCCCCAAACGGATGGCCTGGTTGAAAGGTTCAACCAAACCCTCAAGTCCATGCTGAGGAAGTTTGTGTCAGACACCGGGAAAGATTGGGATAAGTGGTTGCCTTTTCTGTTATTTGCATACAGGGAGGTACCACAAGCATCAACTGGATTTTCCCCATTTGAACTTTTGTATGGTTGGTCAGTGCAAGGACCTTTGGACCTGTTACGCCATCAGTAGGAGAGCAAGCCTCAAGATAGTCAAGCAGAAGGAATTGTAAGTTTTATCTTACAAATAAGAGACCGTCTTGAATCCTACAGGGAGGCTCGTCTGCATCTGGAAAAGTCCcaacagaaacagaagtgtTGGTATGACCAAAAGGCTCGACAGAGAGAGTTCAAGCCTGGACAGAAGGTTCTATTGCTACTACCAACTTCTACCAATAAGCTCCTGGCAAAATGGCAAGGCCCATTTGAAGTTTTGAGAAAGCAAGGCCCTGTGACGTATGAGATCTCTCATCCTGAAAAGGGTAAGCCATCGCAGACCTATCATGTGAATCTCATTAAAGAGTGGAAGGAGCGAGGAAAAACTCAGTTGGCACTGATGATCCAACAAATAGAAGGTGATGGTGGGGATGTTGCTGATAAGCTACAATCCTGGAGTTCTGCATCTCTTCCAAAGACTGACCATCTTACCGTACACCAGCAGAAATCCTTGCAATCTGTGTTCAAAAATTGCCCCTCTGTGTTTCAGTCCAAACCTGGTCGGACAAACGTGGTCAAGCATGTCATCCACCTCAAGGATGACACACCCATCCGACAGAGACCTTACAGGGTACCTGAAAGATTGGTAGAGCCTCTCAAGATGGAAATCCATACCATGTTGGATTTGGGAGTTATTAAACCATCTAGGAGTGAATGGTGCAGTCCAATTGTAAATGTTCCAAAGCCAGATGGATCACTGAGAGTCTGCGTTGACTTCAGAAAGATCAATGCAGTGTCTAAATTTGATGCATATCCAATGCCTAGGATTGATGAACTTCTGGAAAGGCTCGGGAAAGCACAGTACATCACAACCCTTGATCTGTGTAAGGGATACTGGCAGGTACCATTGGCTGAAGAATCACAGGAATACACAGCATTCAGAACTCCTCAGGGCCTATTCCATTTCACTGTCATGCCTTTTGGACTTCATGGGGCGCCAGCAACCTTTCAGCGCTTAATGGACTGTGTTCTGAAGGGATGTGATGCTTTCTGTACTGCATACCTGGATGATGTTGTTATTTTCAGCTCCAGTTGGGATGAGCACCTCAACCATGTTGAATCTGTACTTCAAAACCTGGCAGCTGCAGGTTTAACCTTGAATTTGGACAAATGTGAGTGGGGtcaaacagaggtacgatactTGGGCTATCGACTAGGAAGAGGATTGGTGCACCCCCAAAAAGACAAGGTGGAGGCTATTAAGAATGCCCCGCAACCACATACGAAAAAGCAGGTGCGATCTTTCCTAGGATTGGTTGGCTGGTATCGGCGTTTTGTTCCACAGTTTGCCACCCTTGCTGCCCCACTAACCGAATTGACTCTGAAATCAGGAAAGAACCCTGTACATTGGACTGAGAACTGTAAGAAGGCATTTCAGGCTCTCAAAGATGTTCTGTGCTCAGAGCCCGTACTGGTCAGTCCTGATTTCAACAAACCCTTTACTGTGCAGGTGGATGCTTCCGCTGTTGGCATTGGTGCTGTCCTGGTCCAAGGTGTAAAGGGTGAAGAGCGTCCGGTACTGTATCTGAGTCGTAAACTACTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678653.1 True 4982 mRNA 0.45 1 1897473 1902454

Neighbor

gene id symbol gene type direction distance location
LOC103035142 phb2a,phb2,LOC108440869,LOC107653518,LOC100703857,LOC107564245,LOC101465856,LOC107705310 coding upstream 10892 1867123 ~ 1886581 (+)
LOC103034819 LOC108440876 coding upstream 226231 1639309 ~ 1671242 (+)
LOC103025667 wdr33,LOC107695163 coding upstream 304973 1552795 ~ 1592500 (+)
proc LOC108440860,LOC108440861 coding upstream 361990 1523601 ~ 1535483 (+)
LOC103026285 saga,LOC108440874,LOC108280708 coding upstream 415947 1464657 ~ 1481526 (+)
LOC103031003 NA coding downstream 53708 1956162 ~ 1960545 (+)
LOC103035460 NA coding downstream 326072 2228526 ~ 2261643 (+)
LOC103030361 LOC108430157 coding downstream 895408 2797862 ~ 2891311 (+)
LOC103027018 LOC108430159 coding downstream 1034847 2937301 ~ 2967577 (+)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 1125929 3028383 ~ 3139358 (+)
G148546 NA non-coding upstream 95168 1797408 ~ 1802305 (+)
G148531 NA non-coding upstream 185017 1697084 ~ 1712456 (+)
G148523 NA non-coding upstream 209012 1683458 ~ 1688461 (+)
G148521 NA non-coding upstream 262716 1633060 ~ 1634757 (+)
G148507 NA non-coding upstream 307865 1589157 ~ 1589608 (+)
LOC111194451 NA non-coding downstream 81159 1983613 ~ 1989391 (+)
G148565 NA non-coding downstream 88110 1990564 ~ 1990776 (+)
G148566 NA non-coding downstream 94837 1997291 ~ 1997591 (+)
G148586 NA non-coding downstream 165148 2067602 ~ 2067891 (+)
G148589 NA non-coding downstream 174152 2076606 ~ 2087733 (+)
G148442 NA other upstream 692073 1200285 ~ 1205400 (+)
LOC103021490 LOC103021490 other upstream 699896 1194535 ~ 1197577 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 101145 2003599 ~ 2193725 (+)
G148599 NA other downstream 210219 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 391178 2293632 ~ 2403354 (+)
LOC103027938 NA other downstream 1091752 2994206 ~ 3010066 (+)
G149226 NA other downstream 2089356 3991810 ~ 4009735 (+)

Expression


Co-expression Network