Item | Value |
---|---|
gene id | mib1 |
gene name | mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035913.1 |
NCBI id | CM008316.1 |
chromosome length | 28317440 |
location | 3028383 ~ 3139358 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
mib1 | Enables identical protein binding activity and ubiquitin-protein transferase activity. Acts upstream of or within several processes, including animal organ development; nervous system development; and tube morphogenesis. Located in endocytic vesicle and perinuclear region of cytoplasm. Part of protein-containing complex. Is expressed in nervous system; neural tube; and pectoral fin. Used to study epilepsy. Human ortholog(s) of this gene implicated in left ventricular noncompaction. Orthologous to human MIB1 (MIB E3 ubiquitin protein ligase 1). |
description |
---|
PREDICTED: E3 ubiquitin-protein ligase mib1 isoform X4 |
id | name | namespace |
---|---|---|
GO:0021521 | ventral spinal cord interneuron specification | biological_process |
GO:0045747 | positive regulation of Notch signaling pathway | biological_process |
GO:0007507 | heart development | biological_process |
GO:0060113 | inner ear receptor cell differentiation | biological_process |
GO:0001756 | somitogenesis | biological_process |
GO:0048793 | pronephros development | biological_process |
GO:0071599 | otic vesicle development | biological_process |
GO:0061195 | taste bud formation | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0048546 | digestive tract morphogenesis | biological_process |
GO:0002090 | regulation of receptor internalization | biological_process |
GO:0021654 | rhombomere boundary formation | biological_process |
GO:0031076 | embryonic camera-type eye development | biological_process |
GO:0060218 | hematopoietic stem cell differentiation | biological_process |
GO:0001570 | vasculogenesis | biological_process |
GO:0008284 | positive regulation of cell population proliferation | biological_process |
GO:0051865 | protein autoubiquitination | biological_process |
GO:0007368 | determination of left/right symmetry | biological_process |
GO:0001885 | endothelial cell development | biological_process |
GO:0021986 | habenula development | biological_process |
GO:0045664 | regulation of neuron differentiation | biological_process |
GO:0030318 | melanocyte differentiation | biological_process |
GO:0045685 | regulation of glial cell differentiation | biological_process |
GO:0021508 | floor plate formation | biological_process |
GO:0021519 | spinal cord association neuron specification | biological_process |
GO:0021520 | spinal cord motor neuron cell fate specification | biological_process |
GO:0048471 | perinuclear region of cytoplasm | cellular_component |
GO:0030139 | endocytic vesicle | cellular_component |
GO:0000151 | ubiquitin ligase complex | cellular_component |
GO:0005886 | plasma membrane | cellular_component |
GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
GO:0042803 | protein homodimerization activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K10645 | MIB; E3 ubiquitin-protein ligase mind-bomb |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_022678685.1 | True | 4701 | mRNA | 0.53 | 23 | 3028383 | 3139358 |
XM_022678686.1 | False | 4683 | mRNA | 0.53 | 23 | 3028383 | 3139358 |
XM_022678687.1 | False | 4012 | mRNA | 0.56 | 24 | 3028383 | 3139358 |
XM_022678688.1 | False | 4698 | mRNA | 0.53 | 23 | 3028383 | 3139358 |
XM_022678689.1 | False | 4668 | mRNA | 0.53 | 23 | 3028383 | 3139358 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103027018 | LOC108430159 | coding | upstream | 60806 | 2937301 ~ 2967577 (+) |
LOC103030361 | LOC108430157 | coding | upstream | 137072 | 2797862 ~ 2891311 (+) |
LOC103035460 | NA | coding | upstream | 766740 | 2228526 ~ 2261643 (+) |
LOC103031003 | NA | coding | upstream | 1067838 | 1956162 ~ 1960545 (+) |
LOC111194472 | NA | coding | upstream | 1125929 | 1897473 ~ 1902454 (+) |
gata6 | gata6 | coding | downstream | 59427 | 3198785 ~ 3207918 (+) |
LOC103030995 | cables1,LOC108430174 | coding | downstream | 156622 | 3295980 ~ 3359851 (+) |
LOC103028887 | LOC108430178,LOC108280576,LOC107566471,LOC107691105 | coding | downstream | 445887 | 3585245 ~ 3632868 (+) |
pter | pter | coding | downstream | 539638 | 3678996 ~ 3682521 (+) |
LOC103047776 | NA | coding | downstream | 814045 | 3953403 ~ 3998059 (+) |
G149024 | LOC108430171 | non-coding | upstream | 1183 | 3023810 ~ 3027200 (+) |
G149018 | NA | non-coding | upstream | 4986 | 2979507 ~ 3023397 (+) |
G149019 | NA | non-coding | upstream | 18847 | 3006085 ~ 3009536 (+) |
G149008 | NA | non-coding | upstream | 113854 | 2879989 ~ 2914529 (+) |
G148975 | NA | non-coding | upstream | 524940 | 2499737 ~ 2503443 (+) |
G149040 | NA | non-coding | downstream | 84059 | 3223417 ~ 3274194 (+) |
G149109 | NA | non-coding | downstream | 145366 | 3284724 ~ 3285222 (+) |
G149126 | NA | non-coding | downstream | 227094 | 3366452 ~ 3368137 (+) |
G149130 | npc1,LOC107747515 | non-coding | downstream | 242585 | 3381943 ~ 3384833 (+) |
G149142 | NA | non-coding | downstream | 281872 | 3421230 ~ 3463220 (+) |
LOC103027938 | NA | other | upstream | 18317 | 2994206 ~ 3010066 (+) |
tnk2 | tnk2 | other | upstream | 625029 | 2293632 ~ 2403354 (+) |
LOC103032064 | LOC108440872,LOC107705307,LOC107653521,LOC107660320 | other | upstream | 834658 | 2003599 ~ 2193725 (+) |
G148599 | NA | other | upstream | 913918 | 2112673 ~ 2114465 (+) |
G148442 | NA | other | upstream | 1822983 | 1200285 ~ 1205400 (+) |
G149226 | NA | other | downstream | 852452 | 3991810 ~ 4009735 (+) |
G149243 | cul1,LOC108280768,LOC108433080,LOC105024245 | other | downstream | 987591 | 4126949 ~ 4131384 (+) |
G149256 | NA | other | downstream | 1019842 | 4159200 ~ 4160106 (+) |
LOC111194484 | LOC108433077 | other | downstream | 1153125 | 4292483 ~ 4386634 (+) |
LOC103029581 | LOC108433065 | other | downstream | 1366355 | 4505713 ~ 4512310 (+) |