LOC103021386


Basic Information

Item Value
gene id LOC103021386
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4121315 ~ 4123410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678711.1
GGAACATGGCAGACGCTGCTGTGAAAACTCTGGACTCGCTGACCTGCCCCATCTGCCTGGACCTACTGAGGGATCCAGTGGCGATTCCCTGTGGACACAGCTTCTGTCTGGACTGTATTAAGGACTGCTGGCATCGAGATGATCAAAGGGGGGTCTACAGCTGCCCCCAGTGCAGACACACCTTCACCTCGAAGCCTGTCCTCAACAAGAACACCATGCTGGCTGAACTAGCCGAGGCTATGAGGACTACTGAGGtccaagctgctgctgatcctccttctcttcctgctgctgctgccaatGGTTTTTCTGCTGGATCTGAAGGTGAGGAGTGCGACGTTTGCACTGGGAGAAAACGTGCGGCTGTTAAATCCTGTCTGGTTTGTCTGGCCTCTTATTGTCAAGCTCATCTTCTGCCTCATTTTGAAATTTCCGTCTATAAGAAGCACAAGCTGGTGGAAGTCTCCGTGAACCAGGTAAAGAACCAGGAGAAGAACCAGGAGAAGCCTCAGGAGAAGATCAACGCAGGCTCTCTTCTCGATAAACGACTGGAACTGGAGGTTGACCACATCGGTCGTAGAAGAGTCTCGGCTGCAGCGGAAAGAGCTGAGAAGCAAAAGATGCTGGTGGAGACTCGTAAGGAATCCAAGCAGAGGATCCAACAGATTGAGAAGAACCTGTGGGACCTGAGGCAGGCTAGGAAGACTCTCAGATGCTCTGCACAAGCAGCAGAGGAGGACAGTGAGGAGATCTTCACCGAACTGATTCAGTCCGTCAAGAGGAGACACTCCGAGGTGAAGGAACTGATCCAAACTCAGGAAAGAGCTGAACTGAGACTGGCGGAAGAGCTTGGGAAGAAACTGGAGAAGGAGATCACTGATCTGAGGAGGAGAGACGCCAAGCTGGAGATGCTTCTACGCTCAGAGGATCACGATGAGTTCCTCAAGAGTTTCCAGAGTTTCAAGAGTTCCAAGAGCTTCCAGTCACTCTCTGCTTCTTCTCAACCGACGCACTCATCCCAAATCCCAACCAGTCCACAGTTCTCCATGAAGAAACTGAAGAAGGCTGTTTCTGGAGTGATGGAACAAGTAGATCCCAAACTGCTCAAGTTCTCTGGAGGGTTTAGCTCATTTTCCAAGATGGCCACTCCTCTGCAGAAACCACAAAAGCCTTTACCGCCACCGAAACCGAAGATGAGAGAAGTCTTCCTGAAATTTTCCTGTCAGCTCACTCTAGATCCAAACACTGCGAACAGAAGTCTCGCTCTGTCTGAGAGGAACCGAAAAGTATCGGCTTTGCAGCAGCACCGTAAACTGCGATATCCCGATCATCCTGAGAGATTCGATCAAGTCCGGCAAGTTCTCTGCAGAGAAAGCCTGTGTGGACGCTCCTACTGGGAGGTCGAGATTAGAGCCAGCGATGTCAATATTGCAGTCGCTTATAAAAGCATCAGCAGGAAAGGAGAAGATCACAAGTCTGGATTTGGGTCTAATCATCAGTCCTGGAGTCTCTTCtactattcttcttcttctactggACCCAGTTTCTTCTTcagacacaataaaaaatatactgaaCTCCCAGCAGTCTCCAGATCCAGAagagtaggagtgtatgtggatcCCGGCGCAGGATTTCTCTCCTTCTACAGCGTCTCGGACACACTGACTCTTCTCCACAGAGTCCAAACCACCTTCACCCAGCCCCTCTATCCCGGGTTTGGGGTTTATGGTTGTGACGATGTTCTTCAGATATGTGATCATAATTAAACTTCAGGTAATAAACATCAGCCTCTATTCTGGACAGCTTTGCTTTGGTCAGGGGGCAGTAGAATGTAATGAGTGGGCATGTTGATAcatcatatttttaaagctaGAGCTAAAACTGATGTAGGAAGTAtgtatgaaaagaaaaaaatgcattataggGTTTCCTATAGTGTACGCTCACTGaatgaaacatttataaaatatataaaatacatgctAATACTACAAATTAAGCAGCAAAAGGGTTAAAAGCAAGTAACACTGAGCAACAAATCCCACAAATACCAGTTTAGCAAACGTTACCTTGTGGAAGTCAGccctagttaa

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678711.1 True 2096 mRNA 0.48 1 4121315 4123410

Neighbor

gene id symbol gene type direction distance location
LOC103047776 NA coding upstream 123256 3953403 ~ 3998059 (+)
pter pter coding upstream 438794 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 488447 3585245 ~ 3632868 (+)
LOC103030995 cables1,LOC108430174 coding upstream 761464 3295980 ~ 3359851 (+)
gata6 gata6 coding upstream 913397 3198785 ~ 3207918 (+)
LOC111194481 LOC108433078 coding downstream 146607 4270017 ~ 4286199 (+)
LOC111194482 NA coding downstream 261449 4384859 ~ 4386588 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 313458 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 460903 4584313 ~ 4621712 (+)
trnal-uaa_36 NA coding downstream 719059 4842469 ~ 4842550 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding upstream 5769 4114171 ~ 4115546 (+)
G149247 NA non-coding upstream 18446 4100946 ~ 4102869 (+)
G149222 NA non-coding upstream 29474 3980794 ~ 4091841 (+)
G149239 NA non-coding upstream 88122 4031287 ~ 4033193 (+)
G149221 NA non-coding upstream 117913 3998753 ~ 4003402 (+)
G149260 NA non-coding downstream 47674 4171084 ~ 4226395 (+)
G149278 NA non-coding downstream 161518 4284928 ~ 4341467 (+)
G149302 NA non-coding downstream 373834 4497244 ~ 4812714 (+)
G149335 NA non-coding downstream 500420 4623830 ~ 4627706 (+)
G149340 NA non-coding downstream 595666 4719076 ~ 4771503 (+)
G149226 NA other upstream 111580 3991810 ~ 4009735 (+)
LOC103027938 NA other upstream 1111249 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1717961 2293632 ~ 2403354 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other upstream 1927590 2003599 ~ 2193725 (+)
G148599 NA other upstream 2006850 2112673 ~ 2114465 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other downstream 3539 4126949 ~ 4131384 (+)
G149256 NA other downstream 35790 4159200 ~ 4160106 (+)
LOC111194484 LOC108433077 other downstream 169073 4292483 ~ 4386634 (+)
LOC103029581 LOC108433065 other downstream 382303 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 401216 4524626 ~ 4524708 (+)

Expression


Co-expression Network