LOC111194482


Basic Information

Item Value
gene id LOC111194482
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4384859 ~ 4386588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678717.1
tatatatatatatatatatatatatatatatagagagagagagagagagagagagtggtagagagacaGGTAGTTAGTGATGGAGATGACAGTGAGTGAGGGGGTCCGGTCCCCCCCCCTTCCCCCTCGGGTGCTGGTAGTAATTGTACATTGTTAAAGCTCTGCAGGGGGCTCTGTTGAGACAGTGCTGTTTAGAGGCGTCTCACAATAGCTCAGCTCAATCAAATCCTACAGTAATGTGCTGTCAAACCCTAACAAAGCACTGACACTATCTCACCCAGCTCACGCCTCGCCCGCTTCACAAACTCAGAGCTTCAGCCTCATTCTTCAGTTTTCAGTACAGTAATcacaaattcagaaaaaaagactGTCAATTAAAAGAAGCTTTAATATGTGACGTGTTCATCACAGACAGAAGGAACTCAAGACATTCATTCTTCTGCATCCACACCTGTGTAAATTATGCAGCATGTGGATttacattgtcttgttgaaatattttaatctcaggCTATTGCCTTTCCCCTTTGTGCTCTGAAATCCCTTCTGATTCCTTGAATGATTTAAAGATGTTAGgtgatgtggaaaaaaaaataattacaatctTTGTTTGAGGAACATTGCTTTTTACATCTCAATTATTTTCACATGGATTTGTTGATAAACTGGAAATTTACTTTCCACCATTGTTCCTCAAAGACACATTGGGTACTGCTCTTGTACTAAATCATGATTAAATTCACCTGTTTGAAATCACACCATAACTAACCTTAGAGAGTCTGACTGAGGTTGTGATTGAGTTCCTGACTGAGATTGTGATTGAGTTTCTGACTGAGGTTGTGATTGAGTTTCTGACTGAGATTATGATTGATGTTCTGATTGAGATTCTGACTGAGATTCTGATTGAGGTTGTGATTGAGTTTCTGACTGAGATTGTGATTGAGTTTCGGACTGAGATTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTGTAATTGAGTCTTTGACTGAGATTCTGACTGAGGTTGTTATTGAGGTTGTTATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGATTCTGATTGAGTTTCTGACAGAGGTTATGATTGAGATTCTGACTGAGGTTGTGATTGAGGTTGTGATTGAGATTCTAACTGGGGTTCTGACTGAGATTCTGATTGAGTTTCTGAAAGAGGTTGTGATTGAGGTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGAAAGAGCTTGTGATTGAGGTTCTGGCTGAGTTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGTTTCTGACTGAGATTCTGACTGAGGTTGTGATTGAGATTCTGAAAGAGGTTGTGATTGAGGTTCTGGCTGAGATTCTGACTGAGGTTCTAACTGCTGGTGTTTCTGTGCTGTTCTGCAGGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaag
>XM_022678718.1
tatatatatatatatatatatatatatatatagagagagagagagagagagagagtggtagagagacaGGTAGTTAGTGATGGAGATGACAGTGAGTGAGGGGGTCCGGTCCCCCCCCCTTCCCCCTCGGGTGCTGGTAGTAATTGTACATTGTTAAAGCTCTGCAGGGGGCTCTGTTGAGACAGTGCTGTTTAGAGGCGTCTCACAATAGCTCAGCTCAATCAAATCCTACAGTAATGTGCTGTCAAACCCTAACAAAGCACTGACACTATCTCACCCAGCTCACGCCTCGCCCGCTTCACAAACTCAGAGCTTCAGCCTCATTCTTCAGTTTTCAGTACAGTAATcacaaattcagaaaaaaagactGTCAATTAAAAGAAGCTTTAATATGTGACGTGTTCATCACAGACAGAAGGAACTCAAGACATTCATTCTTCTGCATCCACACCTGTGTAAATTATGCAGCATGTGGATttacattgtcttgttgaaatattttaatctcaggCTATTGCCTTTCCCCTTTGTGCTCTGAAATCCCTTCTGATTCCTTGAATGATTTAAAGATGTTAGgtgatgtggaaaaaaaaataattacaatctTTGTTTGAGGAACATTGCTTTTTACATCTCAATTATTTTCACATGGATTTGTTGATAAACTGGAAATTTACTTTCCACCATTGTTCCTCAAAGACACATTGGGTACTGCTCTTGTACTAAATCATGATTAAATTCACCTGTTTGAAATCACACCATAACTAACCTTAGAGAGTCTGACTGAGGTTGTGATTGAGTTCCTGACTGAGATTGTGATTGAGTTTCTGACTGAGGTTGTGATTGAGTTTCTGACTGAGATTATGATTGATGTTCTGATTGAGATTCTGACTGAGATTCTGATTGAGGTTGTGATTGAGTTTCTGACTGAGATTGTGATTGAGTTTCGGACTGAGATTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTGTAATTGAGTCTTTGACTGAGATTCTGACTGAGGTTGTTATTGAGGTTGTTATTGAGGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGATTCTGATTGAGTTTCTGACAGAGGTTATGATTGAGATTCTGACTGAGGTTGCGATTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGACTGAGGTTGTGATTGAGGTTGTGATTGAGATTCTAACTGGGGTTCTGACTGAGATTCTGATTGAGTTTCTGAAAGAGGTTGTGATTGAGGTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGAAAGAGCTTGTGATTGAGGTTCTGGCTGAGTTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGTTTCTGACTGAGATTCTGACTGAGGTTGTGATTGAGATTCTGAAAGAGGTTGTGATTGAGGTTCTGGCTGAGATTCTGACTGAGGTTCTAACTGCTGGTGTTTCTGTGCTGTTCTGCAGGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaag
>XM_022678719.1
tatatatatatatatatatatatatatatatagagagagagagagagagagagagtggtagagagacaGGTAGTTAGTGATGGAGATGACAGTGAGTGAGGGGGTCCGGTCCCCCCCCCTTCCCCCTCGGGTGCTGGTAGTAATTGTACATTGTTAAAGCTCTGCAGGGGGCTCTGTTGAGACAGTGCTGTTTAGAGGCGTCTCACAATAGCTCAGCTCAATCAAATCCTACAGTAATGTGCTGTCAAACCCTAACAAAGCACTGACACTATCTCACCCAGCTCACGCCTCGCCCGCTTCACAAACTCAGAGCTTCAGCCTCATTCTTCAGTTTTCAGTACAGTAATcacaaattcagaaaaaaagactGTCAATTAAAAGAAGCTTTAATATGTGACGTGTTCATCACAGACAGAAGGAACTCAAGACATTCATTCTTCTGCATCCACACCTGTGTAAATTATGCAGCATGTGGATttacattgtcttgttgaaatattttaatctcaggCTATTGCCTTTCCCCTTTGTGCTCTGAAATCCCTTCTGATTCCTTGAATGATTTAAAGATGTTAGgtgatgtggaaaaaaaaataattacaatctTTGTTTGAGGAACATTGCTTTTTACATCTCAATTATTTTCACATGGATTTGTTGATAAACTGGAAATTTACTTTCCACCATTGTTCCTCAAAGACACATTGGGTACTGCTCTTGTACTAAATCATGATTAAATTCACCTGTTTGAAATCACACCATAACTAACCTTAGAGAGTCTGACTGAGGTTGTGATTGAGTTCCTGACTGAGATTGTGATTGAGTTTCTGACTGAGGTTGTGATTGAGTTTCTGACTGAGATTATGATTGATGTTCTGATTGAGATTCTGACTGAGATTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGATTCTGATTGAGTTTCTGACAGAGGTTATGATTGAGATTCTGACTGAGGTTGCGATTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGACTGAGGTTGTGATTGAGGTTGTGATTGAGATTCTAACTGGGGTTCTGACTGAGATTCTGATTGAGTTTCTGAAAGAGGTTGTGATTGAGGTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGAAAGAGCTTGTGATTGAGGTTCTGGCTGAGTTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGTTTCTGACTGAGATTCTGACTGAGGTTGTGATTGAGATTCTGAAAGAGGTTGTGATTGAGGTTCTGGCTGAGATTCTGACTGAGGTTCTAACTGCTGGTGTTTCTGTGCTGTTCTGCAGGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678717.1 True 1682 mRNA 0.40 2 4384859 4386588
XM_022678718.1 False 1634 mRNA 0.40 2 4384859 4386588
XM_022678719.1 False 1562 mRNA 0.40 2 4384859 4386588

Neighbor

gene id symbol gene type direction distance location
LOC111194481 LOC108433078 coding upstream 98660 4270017 ~ 4286199 (+)
LOC103021386 NA coding upstream 261449 4121315 ~ 4123410 (+)
LOC103047776 NA coding upstream 386800 3953403 ~ 3998059 (+)
pter pter coding upstream 702338 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 751991 3585245 ~ 3632868 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 50280 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 197725 4584313 ~ 4621712 (+)
trnal-uaa_36 NA coding downstream 455881 4842469 ~ 4842550 (+)
trnal-uaa_37 NA coding downstream 456071 4842659 ~ 4842741 (+)
trnal-uaa_38 NA coding downstream 456262 4842850 ~ 4842932 (+)
G149278 NA non-coding upstream 43392 4284928 ~ 4341467 (+)
G149260 NA non-coding upstream 158464 4171084 ~ 4226395 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding upstream 269313 4114171 ~ 4115546 (+)
G149247 NA non-coding upstream 281990 4100946 ~ 4102869 (+)
G149239 NA non-coding upstream 351666 4031287 ~ 4033193 (+)
G149302 NA non-coding downstream 110656 4497244 ~ 4812714 (+)
G149335 NA non-coding downstream 237242 4623830 ~ 4627706 (+)
G149340 NA non-coding downstream 332488 4719076 ~ 4771503 (+)
G149357 NA non-coding downstream 453527 4840115 ~ 4840341 (+)
G149366 LOC108410861 non-coding downstream 520829 4907417 ~ 4909831 (+)
G149256 NA other upstream 224753 4159200 ~ 4160106 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other upstream 253475 4126949 ~ 4131384 (+)
G149226 NA other upstream 375124 3991810 ~ 4009735 (+)
LOC103027938 NA other upstream 1374793 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1981505 2293632 ~ 2403354 (+)
LOC103029581 LOC108433065 other downstream 119125 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 138038 4524626 ~ 4524708 (+)
trnal-uaa_10 NA other downstream 140481 4527069 ~ 4527149 (+)
trnal-uaa_12 NA other downstream 143122 4529710 ~ 4529792 (+)
trnal-uaa_13 NA other downstream 143846 4530434 ~ 4530516 (+)

Expression


Co-expression Network