LOC111194484 (LOC108433077)


Basic Information

Item Value
gene id LOC111194484
gene name LOC108433077
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4292483 ~ 4386634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678720.1
GTTTGTCTTCTCGGTGATGGAGGCGGCGGTCCGCGCGCGCTCTGCGCTGGTGGAGCCGCGCGCTCTGCTCTGAGCCCCTGCGCGCATGGGCTCGGTCACCTCGGCGTTGGCGCGAACGCGCCCCGCGCTCCTGAAGGTGAAGGTGGGCTCGGAACCGCAGAGCGAGCGCAAGGAGAGGGAGCGCGAGGAGCACGAGCCGGAGAAGAAGGAGCACGAGCTGGAGAGCAGGAGGAAGAGGGAGCCTAGCGGTGCTGtggCTAATGAAGACGGAGAAAGCAACACCAGGCCACTGGCACCGTTTGCACGATCCAAGTCCCAGAATGCACTGTGGAACACCATCACTGCTGAAATGGGGATTACAGACAAGAGCCAGGGTCAGAGAGTCACTGCTGATGACCCTCGCAGCCCTGAGGAAATACTGGCAGAAGATTTCCCAGTTACATGTGGACCAGACGCCATGGAGAAGACCGCCTTAAGGCTCCTGTCCCAGACATGGAGTCTCCCACCAAAGAGATCGAGGAGTTTGAGAGCACCTCTCTGAAGTACCTCCAGCCGGACCAGATCGAGAAGATCTGGCTGCGACTACGAGGACTGTGAGTACCACTATTTCTTCTCAACAGGTTTTTTttactgcgtgtgtgtgtatatttgtgtatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgttatcttaATGCATTGTTTTAACATAATGTATAGAAATGTATAGAAAATAGAAGATGATCATGTGTTTTGTTTGCTGTGGTCAAGGACTAGAATTGAAATTAATACATATAGCAACTttcatatcattgctgtccaatgaaaaacaagtatctccatttttgctacataatttaaacacacaa
>XR_002651093.1
GTTTGTCTTCTCGGTGATGGAGGCGGCGGTCCGCGCGCGCTCTGCGCTGGTGGAGCCGCGCGCTCTGCTCTGAGCCCCTGCGCGCATGGGCTCGGTCACCTCGGCGTTGGCGCGAACGCGCCCCGCGCTCCTGAAGGTGAAGGTGGGCTCGGAACCGCAGAGCGAGCGCAAGGAGAGGGAGCGCGAGGAGCACGAGCCGGAGAAGAAGGAGCACGAGCTGGAGAGCAGGAGGAAGAGGGAGCCTAGCGGTGCTGtggCTAATGAAGACGGAGAAAGCAACACCAGGCCACTGGCACCGTTTGCACGATCCAAGTCCCAGAATGCACTGTGGAACACCATCACTGCTGAAATGGGGATTACAGACAAGAGCCAGGGTCAGAGAGTCACTGCTGATGACCCTCGCAGCCCTGAGGAAATACTGGCAGAAGATTTCCCAGTTACATGTGGACCAGACGCCATGGAGAAGACCGCCTTAAGGCTCCTGTCCCAGACATGGAGTCTCCCACCAAAGAGATCGAGGAGTTTGAGAGCACCTCTCTGAAGTACCTCCAGCCGGACCAGATCGAGAAGATCTGGCTGCGACTACGAGGACTGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaagctgctgctgctgctgtgctgagTCACGGGGATTCCCTCTGCCCTGC
>XR_002651094.1
gagagtgagagagagagagagagagaatgagagagagagagaaaaaaaagagagagagtgattgcTTCCTCCCATCGCAGCTTCACTCCGGAGGCTCTCGCGCTCTCCCGAAgcttctcactctctcgctcttctgATTGACGGAACTGTAAGAGCTTTAAACTGAAGTGAATCCAGAGTATCGGAGCCGAGCTGCTTCACAaggaccagagagagagagagagagcaaagaacAAGGGATGACAGAGGCGAGTGCCAGGAAGAAGAGCTACAAGAAAGGGAGGAGTGCCACTTTCAGTATCGATGGGTTCAGCTTCACCATAGtggCTAATGAAGACGGAGAAAGCAACACCAGGCCACTGGCACCGTTTGCACGATCCAAGTCCCAGAATGCACTGTGGAACACCATCACTGCTGAAATGGGGATTACAGACAAGAGCCAGGGTCAGAGAGTCACTGCTGATGACCCTCGCAGCCCTGAGGAAATACTGGCAGAAGATTTCCCAGTTACATGTGGACCAGACGCCATGGAGAAGACCGCCTTAAGGCTCCTGTCCCAGACATGGAGTCTCCCACCAAAGAGATCGAGGAGTTTGAGAGCACCTCTCTGAAGTACCTCCAGCCGGACCAGATCGAGAAGATCTGGCTGCGACTACGAGGACTGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaagctgctgctgctgctgtgctgagTCACGGGGATTCCCTCTGCCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678720.1 True 872 mRNA 0.51 4 4292483 4377412
XR_002651093.1 False 682 misc_RNA 0.60 5 4292483 4386634
XR_002651094.1 False 752 misc_RNA 0.53 5 4312611 4386634

Neighbor

gene id symbol gene type direction distance location
LOC111194481 LOC108433078 coding upstream 6284 4270017 ~ 4286199 (+)
LOC103021386 NA coding upstream 169073 4121315 ~ 4123410 (+)
LOC103047776 NA coding upstream 294424 3953403 ~ 3998059 (+)
pter pter coding upstream 609962 3678996 ~ 3682521 (+)
LOC103028887 LOC108430178,LOC108280576,LOC107566471,LOC107691105 coding upstream 659615 3585245 ~ 3632868 (+)
LOC111194480 LOC108433077,LOC108280739 coding downstream 50234 4436868 ~ 4477488 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 197679 4584313 ~ 4621712 (+)
trnal-uaa_36 NA coding downstream 455835 4842469 ~ 4842550 (+)
trnal-uaa_37 NA coding downstream 456025 4842659 ~ 4842741 (+)
trnal-uaa_38 NA coding downstream 456216 4842850 ~ 4842932 (+)
G149260 NA non-coding upstream 66088 4171084 ~ 4226395 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding upstream 176937 4114171 ~ 4115546 (+)
G149247 NA non-coding upstream 189614 4100946 ~ 4102869 (+)
G149222 NA non-coding upstream 200642 3980794 ~ 4091841 (+)
G149302 NA non-coding downstream 110610 4497244 ~ 4812714 (+)
G149335 NA non-coding downstream 237196 4623830 ~ 4627706 (+)
G149340 NA non-coding downstream 332442 4719076 ~ 4771503 (+)
G149357 NA non-coding downstream 453481 4840115 ~ 4840341 (+)
G149366 LOC108410861 non-coding downstream 520783 4907417 ~ 4909831 (+)
G149256 NA other upstream 132377 4159200 ~ 4160106 (+)
G149243 cul1,LOC108280768,LOC108433080,LOC105024245 other upstream 161099 4126949 ~ 4131384 (+)
G149226 NA other upstream 282748 3991810 ~ 4009735 (+)
LOC103027938 NA other upstream 1282417 2994206 ~ 3010066 (+)
tnk2 tnk2 other upstream 1889129 2293632 ~ 2403354 (+)
LOC103029581 LOC108433065 other downstream 119079 4505713 ~ 4512310 (+)
trnal-uaa_9 NA other downstream 137992 4524626 ~ 4524708 (+)
trnal-uaa_10 NA other downstream 140435 4527069 ~ 4527149 (+)
trnal-uaa_12 NA other downstream 143076 4529710 ~ 4529792 (+)
trnal-uaa_13 NA other downstream 143800 4530434 ~ 4530516 (+)

Expression


Co-expression Network