lrrc24 (lrrc24,LOC107713676,LOC107655866,LOC107600207)


Basic Information

Item Value
gene id lrrc24
gene name lrrc24,LOC107713676,LOC107655866,LOC107600207
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4974279 ~ 5051755 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678741.1
GAAGGGGAAGCGGAACAGCGCGAGAGGCTCGTGCAGGACTGAGCTGGATGGGAGCTTAATGCATTGATGAAGCGTCAGATCGCTGATTGGGAAGCGTTGAATAAAGCCGGAGGGATTGAAGAAGTGTAGATCGCGCAGGTCGCGCGGGACAAACGGTAGGCGGCGCGACaacatcctcatcatcatcatcattgcgTGATATTTGCGTACGGAAGGGTGCGCGCGGTGGACGCTGACCAGGCGAATGGAGGGACAGGACCCTGGCCTTTAGGGACCGCCGCTAACCACGGGTGGAATGAGGCTCGTGCGCCCGTGTTTGGTTCGCAACCTTAACGTGGATTGACGGCCAGCCAATCTCAGCCCTGAAAGGTCCGATTGTCCTACAAAGCCGCTGATTGATTTGaaatgaattgaattgaattcagGAGACCAGCTCATAACGAAACGTTGGAACATTGAAACGTCGGAACGTCTGCAGAACTGAAGCAGCACTTCTTGGCTCGAGACGTTTGACAGGCGCTGTGGTGTTCGGAGATGgctctgctcctcctcctccatatTCCCTCGCTCCTGGCCCTGCTGGCCCTGTTCCCCTCGCTCTCTCTGGGCTGCCCCTCGGGCTGCCGCTGTTACAGCCTGACGGTGGAGTGCGGCTCCATCGGCCTCAAGGAGATACCGCGGGGCATCATCCACGGCACGCAGACCATCTTCCTTCAGGACAACGCCATTGGTCAGATCCGAGGTGAGGACCTGTCTGGCATGGGCTGCCTGCACTACCTTTACCTGCAGAACAACAGCATTACGGTTATGGAGCCGGGGGCCTTCGTAAGCCTGAGCCAGCTGCTGGAGCTCGCCCTTAATGGGAACAGACTCCACCTGATCTCCGCTGATGTTTTCCGTGGCCTGGAGCACCTGCGCATCCTGTACCTGGCAGGGAACCAGATCACCCGGCTGGAGGACTACACCTTCCGCGGCCTgcagCGCCTACAAGAACTACACCTGCAGGAAAACACCATGGAGGCCCTGGATGAGCAGGCCCTAGTGGGCCTATCCTCTCTGGCTCTGTTGGACCTAAGCAGGAACAACCTAAGGACCCTCAGTCCAGCTACGCTCAGACCCCTAATCAGCCTACAGGTTCTCCGCATCACAGATAACCCATGGCGCTGCGACTGTGCCCTCCACTGGCTTCGTGGTTGGATCAACGAGGAAGGCCAGCGACTCCTGAGCTCGGCAGAACGGAGGCTGCTATGCGCAGAGCCCCCACGCCTTTCTCACCTGAGCCTGGTGGAGGTTCCTGCCAACAGCCTGGTGTGCATCCCACCTGCTGTCCAACTGGAGCCCAGTCACTTGACTGTGCGTCTGGGAGAGAGCCTGCGAGTTTCCTGCCAAGCCTCTGGCTACCCCCAGCCCCAGGTCACCTGGAGAAAGGCATCTCATGGCAAAGCCCAGCTGTCTCCTCGAGGGTTGGTGCAGGAGGTAGGCATGGATGGAGATAGCAGAGCCAGCGGAAGGCTGGTGACAGCCAGGCCTAGCGGAAACGGGGGAACCGTCGGTGGCCGGAATCCAGGGCGAGGGATGGAGGATAATGGAGACAGAGACAACTTTGGTCCAGATACAGGTAGTGGAATGCTTTTCCTGAGCAATGTGACTGTGGCCCATGCAGGACGCTACGAATGTGAAGCTTGGAATCCAGGTGGAGTTGCCCGAGTGACCTTCCACCTTTCTGTCAACATgtcttcttcctcatcctcttcaGCTGTCTGGCCTCGCTTGCActcctcatcatcctcctcctcttcttcatcctcctcaaACTACCACCCGTCTTCAGGAGACGTCAGCCAAGAACCTATTTACGAGCTGGAGAGCATGGACTTTAATGCTCTGGGCACCGCCACCCAGACAGCGATTGCCGTTGGCATCTCTCTGCTTGCTCTTACTGCATTGCTCCTGCTCTGCATGATCTACAGTCGCCATCGTCAGCGGCAGAAAGAGGAGGGTGGTGGCTATGGGCCAAGCAAGGAGGAGTCCATCCTCTACGTCAATGACTATTCCGATGGACCCACCACCTTTGCTCAGCTCGAGGAGTACCGGGATGAACGGGGTCACGAGATGTATGTGCTGAATCGTGCCAAGCCGGTGCTCCCCCCTCCACCTGTACCAGGACACAATCCTCTGCAGACCAGCGAGTGTCTCCAAGGCCAAGGAGTCCTGACCCCAGGTAGAGTAACAGGCCTTGGTCCTCGCAGGGCTCCTGCAGAAGGTGGTGAAGGACCTCCGCCAGACCCAGAGGGACTGTTCATCAACCAGAGCCTGCTGTTCGACACACAGATTGCCTATGAGATCCACTGCTGAGGAGGAGCGAATCAACTCAGTTTGAAAGGAGAAGAGGTCGTAAAAAGGCCAACTAAGAAAAGGCTCATTGACTGCACATGGCACTTGAAGGAGGGAGGAGTTGAAGGTTGAACAGGTTCAACAGGTTGCTGGAGGATCTGcctatttctgttttttgttccaAAAGCAAAAATGCTTTGATTATTATTAGATTACAAGAACAACATGAAGGTTGCTTCAAAAGGACATTGATGACTTACTTACCTTGCCAAGGGTCAAGATCTGATCTGATCCACTTAATCTGATGCTTTAGGACCCAAGCTAGGACCTTCAACTGGACCAGTTAGATAGATGAACCTACCaaaaagtgaggcagagcactgtataatttcttttttccttCATGTCTTGGAAGCTGGGAAGCGCGGCGGCATCTTGAGGACCGGGCTGCCACAGTCAGACAGTCCTAGACACTGACCTACTTTTCAGGAGCAGAGGTGAGAATAACGAAGGACATTTTTGAGACTGTGTTTCCCTATGTGTCAAACATTTcggttgttttttttcctgcttctgcCAGGCAATGTGAATAGCTGTCCTCGTTGCCCATTCGGAAGCTTCCTTTATATTTTGAGAATCTTTCTTTTCACTTTCATACGGATGACATTTGTGTGCATTCTCATGCAAATGAGAGCGGCAGAAGGAGCTGACTGAAAGcgtctgagaaaaaaattaGGTCAGTATTTGTGATAGCAACAAAATAGGTGGAGTTAATATGTTTAGCGAAGACAATATTCTCTCACCTTCTCGACCTCTATCTGAGtaacactgtgaaaaaaaaaagctctagaCAATAGATTTCCAGAATGATTACCAACATTTCTAATGTTTCAAATGGATAGCGGTAGGTCATCAAGATGGCATTAAGACATTTTCCGCTAGAATAGACGGTAAAGGATTGCGTGAATGTgagcgtgcgagagagagacaataaGAATGACCAGGTTTGTACAGAAATTGCCTATAATCACTTCAGGGTATACATATAAACGCTCATCTCAGCCGGTTTAAGCTGGCGACATCTGAAGGTGTGAAGCTTCTGCTCGGTAAAATAGTTTTTGAAtagtatgtatttatttctgtttctgtcaGATGTCTAATAAATGTGACGTTCctgttttatgcaaataaaatttgCTTTTTGATCCA

Function

symbol description
lrrc24 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and retinal inner nuclear layer. Orthologous to human LRRC24 (leucine rich repeat containing 24).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678741.1 True 3543 mRNA 0.52 5 4974279 5051755

Neighbor

gene id symbol gene type direction distance location
LOC103027894 LOC108410862,LOC108280684 coding upstream 97891 4849153 ~ 4876388 (+)
trnal-uaa_58 NA coding upstream 126543 4847655 ~ 4847736 (+)
trnal-uaa_57 NA coding upstream 126733 4847465 ~ 4847546 (+)
trnal-uaa_56 NA coding upstream 126923 4847275 ~ 4847356 (+)
trnal-uaa_55 NA coding upstream 127113 4847084 ~ 4847166 (+)
LOC111194608 NA coding downstream 88627 5140382 ~ 5143020 (+)
LOC111194609 NA coding downstream 100810 5152565 ~ 5165963 (+)
LOC111194490 LOC108424092,LOC108280904 coding downstream 119511 5171266 ~ 5172421 (+)
LOC111194491 LOC108424027 coding downstream 135083 5186838 ~ 5188742 (+)
LOC103032323 LOC108424026 coding downstream 141070 5192825 ~ 5194089 (+)
G149572 NA non-coding upstream 40045 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 41442 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 64448 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 133938 4840115 ~ 4840341 (+)
G149302 NA non-coding upstream 161565 4497244 ~ 4812714 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 171894 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 293089 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 321254 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 374137 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 735170 5786925 ~ 5816467 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 209434 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 414264 4559933 ~ 4560015 (+)
trnal-uaa_34 NA other upstream 414931 4559266 ~ 4559348 (+)
trnal-uaa_33 NA other upstream 415214 4558983 ~ 4559065 (+)
trnal-uaa_32 NA other upstream 415722 4558475 ~ 4558557 (+)
G149595 NA other downstream 39227 5090982 ~ 5102358 (+)
LOC111194607 NA other downstream 59569 5111324 ~ 5114716 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other downstream 144386 5196141 ~ 5199985 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 176163 5227918 ~ 5258861 (+)
G149754 NA other downstream 673514 5725269 ~ 5727420 (+)

Expression


Co-expression Network