LOC111194490 (LOC108424092,LOC108280904)


Basic Information

Item Value
gene id LOC111194490
gene name LOC108424092,LOC108280904
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5171266 ~ 5172421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678742.1
GCCCTTGACAATATCTCTGCATCCACAGCACAGCTCTGTGATACACTCTGCTCTGACTTGTGATTCTCTTGGACTAAGCGGGAAGAAGTGTTGAAGAATGGTTTCTGCTGGAATGCAAATGCTGGGCACGGCCCTGGCCATCATCGGCTGGGTCATGACCATCGTGGTGTGTGCTCTTCCCATGTGGAAGGTCACAGCCTTCATCGGACAGAACATCGTCACAGCGCAGACCAGCTGGATCGGCATCTGGATGACCTGCGTGGTTCAGAGTACTGGACAGATGCAGTGTAAAGTCTACGACTCCATGCTGGCCCTCGATTCAGACATGCAGGCCGCCCGGGCTCTCTGCGTCATCTCCTTATTGGTGGGCATCGTTGGGATCCTGCTGGCCATGGCTGGTGGAAAGTGCACCAACTGCATCGAAGAAGAAAGCACCAAGGCCAAGGTGGGCATCGCGTCCGGCGTGACCTTCATCATCTCCGGCTTGCTgtgtctcattcctgtctgcTGGACGGCCAACTCCATCATCCGGGACTTCTACAACCCACTGGTCGCCAGTGCTCAGAAGATGGAGATCGGAGCTTCTCTGTACATCGGCTGGGCCGCTGCCACATTGATGTTGATTGGCGGAGGCCTGCTCTGCTGTACCTGCCCACCAAAGGACAACTACTCATCCGCCAAGTTCTCAGCCGCCAAGTCTGCAGGGTCCAAGGGTTATGTGTGAGAGGATTCCAAAGACATTTTGGACTTTTTTATCATTGGTCAACTGCTGGACAAGCTGCTTATATGTGcttatatttttgttacactGCCAAACAAAGACAAGCCAGTCATGTTAcaataataatgatgtacattatgATTTATAATGGATGACAGTGTGTGCCAAAGCAGGGTGTGGCAATTTTTCAGAACTGAGTTTtcaaaaatgtcatattttgtttgtttgtatgtatgtactgtatgttttttcacatttcactAGAACCTTCATTTCAAATGTGTCTTGTTTAGTTGCTTATTAAATAGTATATCAATTTTACTACTTTTGATAGATTTGCCTTGCATTTCTTCCATAACATTTTTGCTTTATGTGTACATATGAAATGCCTTCTATTTGTTATGTTTCTTTGTTAATTATTAAAGGTAAATCAGA

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678742.1 True 1156 mRNA 0.46 1 5171266 5172421

Neighbor

gene id symbol gene type direction distance location
LOC111194609 NA coding upstream 5303 5152565 ~ 5165963 (+)
LOC111194608 NA coding upstream 28246 5140382 ~ 5143020 (+)
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207 coding upstream 119511 4974279 ~ 5051755 (+)
LOC103027894 LOC108410862,LOC108280684 coding upstream 294878 4849153 ~ 4876388 (+)
trnal-uaa_58 NA coding upstream 323530 4847655 ~ 4847736 (+)
LOC111194491 LOC108424027 coding downstream 14417 5186838 ~ 5188742 (+)
LOC103032323 LOC108424026 coding downstream 20404 5192825 ~ 5194089 (+)
LOC111194610 NA coding downstream 29219 5201640 ~ 5204000 (+)
LOC111194492 NA coding downstream 31872 5204293 ~ 5207059 (+)
LOC103032228 NA coding downstream 37888 5210309 ~ 5211775 (+)
G149574 NA non-coding upstream 133472 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 237032 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 238429 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 261435 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 330925 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 51228 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 172423 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 200588 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 253471 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 614504 5786925 ~ 5816467 (+)
LOC111194607 NA other upstream 56550 5111324 ~ 5114716 (+)
G149595 NA other upstream 68908 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 406421 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 611251 4559933 ~ 4560015 (+)
trnal-uaa_34 NA other upstream 611918 4559266 ~ 4559348 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other downstream 23720 5196141 ~ 5199985 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 55497 5227918 ~ 5258861 (+)
G149754 NA other downstream 552848 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1410625 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1762920 6935341 ~ 6947936 (+)

Expression


Co-expression Network