LOC111194491 (LOC108424027)


Basic Information

Item Value
gene id LOC111194491
gene name LOC108424027
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5186838 ~ 5188742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678743.1
AAAGTCTTGCTGAAGGCGTATTTTTGGCTGTCTGAGGAAGAAGGTCTTCCATGCATTTGCATTTCTCCGGTTCTGGGTTGTAGAAAGTAGGAAAGGAATATGGCTTCTCAAGGAATTCAGATCATGGGTATGATCACAGCTTTGCTGGGTTGGCTGGGGGTCATCATGGCCTGCGGCTTGCCTCAGTGGAAGGTTACGGCCTTTATCGGTTCCAACATTGTGACGGCGCAAATCATGTGGGAGGGCATCTGGATGAGCTGTGTGGTCCAGAGCACCGGACAGATGCAGTGTAAGGTCTACGACTCCATGCTGGCCCTTGGCTCAGACCTGCAAGCGGCCAGGGCCATGATCGTTATCTCCATCTTGGCTGGAGTCTTTGGGATTATAATGTCCATGGCTGGTGGGAAGTGCACCAACTGTGTCGAGGATAGCCGCAGCAAGGCCATGGCATGCCTGACCGCTGGAGTTCTGTTCGTAATCGCCGgcttgctgtgtctgatccCCGTCTCGTGGTCGGCCCACACCATCATCTCGGACTTCTACAACCCCTTGCTGCTGGAGGCTCAGCGGAGGGAGCTGGGGACATCTCTTTACATCGGCTGGGCTTCTGCTGGTCTGCTGCTCCTGGGCGGAGGACTGCTATGCTGGAACTGCCCACCAAAAGAGCAGCAGCGCATCTACAACCCCAAGTTTGCGCCAGTAAGATCCACCGCCACTTCCAGGGAATacgtctgagagagagaggactagAGACTAGAATACCTTTTAACCAACGAACTGTCTATTTGTTAAATTTCTTAAGGAATTTGTTAAAATGGAAATTATTGTAGATGttcattagcttttttttttgtttgtttagatttgTGTGACAACAAAACTGGGTTTTCATCTTTGGACCAATTAGTGTAAATGTTGTACTTCATTTTTCTGTATACAGCTGTCTCTTCTAGCATTCATTCTGGTTACATGTAAGTGATGCGCTTAATAAGAAATGAACTTCCATATATATGCGCATTAATGTGGGATATGGGGATTTAACGACAATGCTAGTATctgatatatgtttattttttctgccaATATTAATAGGCATTTAAATGGAATTGGCAATGGAATTAAATCCACCTGGCTCAGGATATCaggatacatatatatatatcaaacacttaaaaatggttataaatgtaatgaaatgaagaaaatgcagatattttaacgcggaaaaaaaaagcaatcggTCAAACATTTGTCCAAAGCTAATATATTTTATCTGCTGATACTAATACATTTCCATCAATGTGTCATTGTTAATCCATTTAATCATGAGCTTTAATGTTATGaacatatgtaaaaatatatagtcaTATCTAATCTAAATGCTAAacctaaatgaaaaaaaaatacattctttCTAGATTCTACATAGCTAaaacatattacattatatgAATTGGTTTTAATTAACATTGTATGTTTTGTTATAATGGCAAAGCTGGAACATTAACATCCTATGCGTAGGTAAATGTAtggatatatttaaaaaaaaatcattaatgttTTAGGACAACAAAGATTCTTAATTTTTAATGGGAATcgctataaaaaaatagattattctTAGTCATCTTGGAGCATTTCTTTTGGCCAATTCATTGTGAAAGTTTtgtacaatgtaaagaacaactgccagattcacacaaatctgaaaaaagtgaaaaatggcaAAAGTTATGTTTGATAATACacatttgtatgttttatgtttttattttgaataagtAATCTGTTTATAGACTTCGATGTTATCTCTTTGGCTTTTTGTACATTTGGGCAGCTGATCCATGatataaaatgatataataaatattataataaaatgtatattgttaAATTCACTCAAAT

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678743.1 True 1905 mRNA 0.38 1 5186838 5188742

Neighbor

gene id symbol gene type direction distance location
LOC111194490 LOC108424092,LOC108280904 coding upstream 14417 5171266 ~ 5172421 (+)
LOC111194609 NA coding upstream 20875 5152565 ~ 5165963 (+)
LOC111194608 NA coding upstream 43818 5140382 ~ 5143020 (+)
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207 coding upstream 135083 4974279 ~ 5051755 (+)
LOC103027894 LOC108410862,LOC108280684 coding upstream 310450 4849153 ~ 4876388 (+)
LOC103032323 LOC108424026 coding downstream 4083 5192825 ~ 5194089 (+)
LOC111194610 NA coding downstream 12898 5201640 ~ 5204000 (+)
LOC111194492 NA coding downstream 15551 5204293 ~ 5207059 (+)
LOC103032228 NA coding downstream 21567 5210309 ~ 5211775 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding downstream 26543 5215285 ~ 5217086 (+)
G149574 NA non-coding upstream 149044 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 252604 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 254001 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 277007 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 346497 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 34907 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 156102 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 184267 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 237150 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 598183 5786925 ~ 5816467 (+)
LOC111194607 NA other upstream 72122 5111324 ~ 5114716 (+)
G149595 NA other upstream 84480 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 421993 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 626823 4559933 ~ 4560015 (+)
trnal-uaa_34 NA other upstream 627490 4559266 ~ 4559348 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other downstream 7399 5196141 ~ 5199985 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 39176 5227918 ~ 5258861 (+)
G149754 NA other downstream 536527 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1394304 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1746599 6935341 ~ 6947936 (+)

Expression


Co-expression Network